Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2778 ATGGATGGTAGAAGACATTCTGTTGATGTGCCTATTTCTAAGACTCTTGTGGCATTAAGGAGAGTAAGGTCATTAAGGGATCCTTCAACAAATGGTATTAGTAATCTTTCTCCTTTGATTGATAATGAGCATTGGGAAAATGGAATTTCTTTGAGGTTTGTTAATGCTACTTATGCATGTGATTCTGATGATAATGGTTATTTAAGGTCAAAAGGTTTAGATTTTAAGGGTCATAGAGAACATGGTACTACTACTACTAGTACTAAGTTTGAAAAGAATTGTTACTGTGAGGAACATCAACAAAATGATGAATTAGTTTACTCTAAGAATCCTAATCAGCAGGGTGTTTTTGGGAATAAATCACCGAACGAAAGCTGTTGTAGTAACCATGAAGCTATAGGATTGGATTTGGCTTCTGTTATTCCTTATAGTAATCATTTGAAGGATGAGGAATCGTGCTATTTGTCGACTGCATTGTCATCGAAATTAGGGAGAATGGATTATACAAAGTCGACTAGAAAGTTTATGCGGAAGAATCAAGTGAAACCGTTTGAATTGATGCGTGATAATGGAAGTAGTGTTGAGAGTCCATGTCTTAGTGCATCAACACATACACCTCAAGATGTTGATGTTTTAGTTGATAATAATGGATGTGGAATAAGCTGTTGTTGGTCGAAATCACCGAGGTTTAAAGAGTCGAATTATTATTCTGAAATGGAAGATCTTCCGTTGATGTTGCAGCACGGTAATGAGACGGATCTTCGTGGACATAAAAGCATGAGACATATTGGTGGTGAGATTAGTCCAACATTGGAAACTCCTAGAAGTTTGTCTATAAAATTCAAGCCAAAATCTTTTGATGATTTGGTTGGACAAAATGTGGTTGGAAAGTCTCTTTTGGGTGCCATCTATAGAGGAAGGATAGCATCATTTTATCTCTTCCATGGTCCGCGTGGCACGGGAAAGACATCTGCATCAAGGATATTTGCTGCTGCGCTGAATTGCCTCTCGTACGAGGAGAAAAAGCCGTGTGGTTGTTGTAGAGAATGTGTTTTGTTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTTGACTCTTTGAGAATCAACCGTTCGGACAAGGCTAAATCTCTTGTTAAGAATGCATGCTCAACAACTCCAGTGTCGTCGCGTTTTAAGGTGTTCATTATTGATGAGTGCCAGTTATTGAATAAGGAAACATGGGTGACTCTTTTGAATAGCTTAGGGAGTGTTTCTCAACATGTGGTTTTTGTGATGATTACTCCTGATTTGGATAAGCTTCCACGAAGTGCGGTTTCTCGAGCTCAGAGGTATCACTTTGCAAAGATTAAAGATGCCGACATTGCAAACAGATTGAAAAGAATTTGTGCTGAGGAGGGTCTTGAATCTGAACAAGATGCTTTGGACTTTATTTCTGCTAAATCATGTGGTTCTCTTAGGGATGCAGAAATGATGCTTGACCAACTAAGTTTGCTTGGTAAAAAAATCACAATTTCCTTAGTCTACGAACTCACTGGAGTAATTTCTGATGATGAATTGCTTGATTTGCTGGACCTGTCTTTTTCATCCGACACTTCAAATACGGTTATAAGAGCTCGGGAGCTGTTGAGATCAAGGATAGATCCTTTACAACTTATATCTCAGCTGGCGAATCTTATTATGGACATTCTTGCAGGGAAATGTGAACTAAGCGGTTCTGAAATCAGAAGAAGATTTTCTGATAAACATATTTCGGAAGCAAGCATGCATAAACTTAGTCATGCATTAAGAATACTTTCTGAAGCGGAGAAGCAATTGAGAATTTCTAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTACAGTTAAGCTCTATAGAATATTCATCTGTTGATGCTAATGATGCCAAGTTGTGTTTGACAGCTGCATCCAATAGAGATGGTGATTTATGCAGTACATCATCAACAGGTGAAACTTTGAAGCGTCTCGCTACAGGTAAGTGTGATGAGAAGTCATATAAAATAGAGGTTCCGGAGGATGACAAAGCGACATTGGATTCTATATGGTATAAAGCTACTGAGATATGTCAATCTAGAAGGCTCAAGGCTTTTCTTAGGAAGCAAGGGAAGTTATCTTCAGTTTGTATTAATCAAGGTCTTGCGGTTGTGGAGTTGGAGTTCCGCCACCGTGTCTACGTAGCTAGAGCTGAGAAATCATGGAAACAAATTGCAAGTTCTCTACAGGTCATATTGGGCTGTAACATTGAGCTCAGAATCAATCATGTACCATGTACTTCAGATTCAAAGTATGCTAAATTGAAGAGGTCATCCTTCAATTTCTTTAATTGTTCGCGCAGAATTCTTCGGAAATCACTATCATCCGATGAACATGGATGTGAATCAGACTATGCTGATTGCACTTCTCAAAAGCCTATGATGATAGACCGAACTCTATCTCGCTCCTCTGATTGCGGATCTCGTGCGCCACCTCTTGAGTCCTACAATGGAATGGAAGTTGTAACAACTCTTAGAAGCTGTGAAGGGAATTTACTAAGCTCAGGTAAGATATTTCTGAATAGGATAGATCAAGAGACACCAAGGATTTCGTTTTCTAGAAATGATTCTGTCAAGGAAGAAGGGTGCAATCATGAAGATCTCGCTTCATCAACTTTTGATTTAGATAATAACCGTTCTAACTGTTTTCCTCGAACGCTTTGGCTTCGTAGAAAATTTGCATCTTCATATGCGTCAAAACAAAAGGAGTTTTGTTTTACCAATCCACAAGTACAAATGTACTGA 2799 0.3859 MDGRRHSVDVPISKTLVALRRVRSLRDPSTNGISNLSPLIDNEHWENGISLRFVNATYACDSDDNGYLRSKGLDFKGHREHGTTTTSTKFEKNCYCEEHQQNDELVYSKNPNQQGVFGNKSPNESCCSNHEAIGLDLASVIPYSNHLKDEESCYLSTALSSKLGRMDYTKSTRKFMRKNQVKPFELMRDNGSSVESPCLSASTHTPQDVDVLVDNNGCGISCCWSKSPRFKESNYYSEMEDLPLMLQHGNETDLRGHKSMRHIGGEISPTLETPRSLSIKFKPKSFDDLVGQNVVGKSLLGAIYRGRIASFYLFHGPRGTGKTSASRIFAAALNCLSYEEKKPCGCCRECVLFFSGRSKDVKEVDSLRINRSDKAKSLVKNACSTTPVSSRFKVFIIDECQLLNKETWVTLLNSLGSVSQHVVFVMITPDLDKLPRSAVSRAQRYHFAKIKDADIANRLKRICAEEGLESEQDALDFISAKSCGSLRDAEMMLDQLSLLGKKITISLVYELTGVISDDELLDLLDLSFSSDTSNTVIRARELLRSRIDPLQLISQLANLIMDILAGKCELSGSEIRRRFSDKHISEASMHKLSHALRILSEAEKQLRISKNQTTWFTAALLQLSSIEYSSVDANDAKLCLTAASNRDGDLCSTSSTGETLKRLATGKCDEKSYKIEVPEDDKATLDSIWYKATEICQSRRLKAFLRKQGKLSSVCINQGLAVVELEFRHRVYVARAEKSWKQIASSLQVILGCNIELRINHVPCTSDSKYAKLKRSSFNFFNCSRRILRKSLSSDEHGCESDYADCTSQKPMMIDRTLSRSSDCGSRAPPLESYNGMEVVTTLRSCEGNLLSSGKIFLNRIDQETPRISFSRNDSVKEEGCNHEDLASSTFDLDNNRSNCFPRTLWLRRKFASSYASKQKEFCFTNPQVQMY* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2778 932 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 112 896 - -
Tpr5g2778 932 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 500 IPR027417 -
Tpr5g2778 932 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 276 623 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Tpr5g2778 932 Gene3D - 513 627 - -
Tpr5g2778 932 Gene3D - 451 512 - -
Tpr5g2778 932 CDD AAA 290 441 - -
Tpr5g2778 932 SUPERFAMILY post-AAA+ oligomerization domain-like 520 621 IPR008921 GO:0003677|GO:0006260
Tpr5g2778 932 Gene3D - 270 448 IPR027417 -
Tpr5g2778 932 CDD HLD_clamp_pol_III_gamma_tau 450 513 IPR045085 -
Tpr5g2778 932 Pfam DNA polymerase III, delta subunit 292 450 - -
Tpr5g2778 932 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 112 896 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2778 Tpr-Chr5 49898563 49904307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2778 267 565 Core DNA Replication Machinery Family AT1G21690 24.172 5.59e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2778 - - pvu:PHAVU_003G207500g 1256.51