Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2777 ATGGCGTCCAAAGAGGGATTTCTGACTGAAGGACAGAGGGAGACGTTGAAGATTGCTAGTCAAAATGCGGAGATTTTGTCTTCTTCGCCTAAGTCGCCGTCGGCTTTGCTTGCTGATCATCACATCAAAGCTCCTGCTGGTGGTGGTAAGGCTCACACTGCTGGGATAGCTGTTAGGCATGTGCGGCGGTCACATTCTGGAAAGTATGGCCGTGCGAAGAAGGATGGTGCTGGTGGCAAGGGCACTTGGGGAAAATTGATGGACACAGAAGTTGATTCTCACATAGACCGCAATGATCCAAATTATGACAGTGGCGAGGAACCCTATCAGCTTGTTGGGTCTACTGTTACTGATCCTTTGGATGAATTCAAGAAAGCAGTGGTATCCCTCATAGATGAATACTTCAGTAATGGGGATGTAGATTTGGCAGCATCTGACCTAAGAGAACTTGGCTCAAGTGAATATTATCCATACTTCATTAAGCGACTTGTTTCCATGGCCATGGATAGGCATGATAAGGAGAAAGAAATGGCTTCTGTTCTGCTTTCAGCACTGTATGCTGATGTCATTAGTCCCACGCAGATTAGGGATGGTTTTTTTATGCTTCTTGAGTCTGCTGATGATCTTGCAGTGGATATCCTGGATGCAGTTGACATCCTTGCTTTATTCCTGGCACGTGCTGTTGTTGATGACATTCTTCCTCCAGCCTTTCTTGCCAGGGCAAGGAAGGCTCTTCCAGAATCTTCCAAGGGATTTCAGGTAATCCAGACTGCCGAGAAGAGTTATCTCTCAGCTCCACACCATGCAGAACTTGTTGAGAGACGATGGGGTGGTAGCACTCACATTACTGTTGAAGAAGTCAAGAAAAAGATTGCTGATTTACTTAGAGAATATGTGGATAGTGGTGAGACACTTGAAGCCTGTAGGTGTATACGTGAGTTGGGAGTAGCATTCTTCCATCATGAGGTTGTGAAGAAGGCCCTGGTGCTTGCTATGGAGATTCCTTCGGCAGAACCTCTACTGTTGAAGCTATTAAAAGAAGCAGCAGAAGAAGGACTGATTAGTTCCAGCCAAATGGCGAAAGGGTTTTCTCGTTTGGCAGAAGGCCTAGATGATCTTGCTCTTGATATTCCGTCAGCTAAAGCCTTGTTTCAGTCATTTGTCCCCAAGGCAATCTCTGAAGGATGGCTTGATGCTTCCTTTGCCAATCCAGCTGGTGAAGTTGGGGAATTCCAAGTGGAAGATGAGAAGGTGAGGAAGTACAAAAAGGAAGCTGTATCTATAATTCATGAGTATTTTCTCTCTGATGACATTCCTGAACTCATTCGAAGTCTAGAAGATCTTGGAGCACCCGAGTATAACTCAATATTTTTGAAGAGGCTAATAACACTTGCTTTGGACAGAAAGAACAGAGAAAAGGAAATGGCATCTGTCCTGCTATCTGCACTTCATATAGAGATATTCTCAACAGAGGATATAGTTAATGGTTTTGTCATGCTTCTGGAAAATGCAGAAGATACAACACTGGACATACTGGATGCTTCAAATGAGCTTGCTCTGTTTTTAGCTCGGGCTGTGATTGACGATGTGCTTGCCCCATTGAACTTGGATGAAATTGGCAGCAGGCTACCACCAAAATGCAGTGGTAGTCAAACTGTTCGTATGGCTCGAACACTCTCATCTGCTCGTCATGCAGGTGAAAGGCTATTGAGATGCTGGGGTGGGGGAACTGGATGGGCTGTGGAGGATGCTAAGGACAAGATCACAAAGCTCTTGGAGGAGTACGAAAGTGGTGGGGTTGTCGGTGAAGCATGCCATTGCATTCGGGACTTGGGGATGCCTTTCTTTAACCATGAGGTAGTGAAGAAAGCTTTGGTTATGGCCATGGAGAAGAAGAATGATAGGTTGCTAAATCTGCTGCAGGAGTGCTTTGGTGAAGGCCTGATCACCACCAATCAGATGACTAAAGGGTTCACCCGAATTAAGGATGGTCTAGATGATCTGGCTCTGGACATTCCAAACGCGAAGGAAAAATTTGCTTATTATGTGGAGCATGCCCAGAGCAAGGGCTGGCTTCTACCATCATTTGATTCCTCTGCCACAGATGTCTAA 2112 0.455 MASKEGFLTEGQRETLKIASQNAEILSSSPKSPSALLADHHIKAPAGGGKAHTAGIAVRHVRRSHSGKYGRAKKDGAGGKGTWGKLMDTEVDSHIDRNDPNYDSGEEPYQLVGSTVTDPLDEFKKAVVSLIDEYFSNGDVDLAASDLRELGSSEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPTQIRDGFFMLLESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALPESSKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVDSGETLEACRCIRELGVAFFHHEVVKKALVLAMEIPSAEPLLLKLLKEAAEEGLISSSQMAKGFSRLAEGLDDLALDIPSAKALFQSFVPKAISEGWLDASFANPAGEVGEFQVEDEKVRKYKKEAVSIIHEYFLSDDIPELIRSLEDLGAPEYNSIFLKRLITLALDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLENAEDTTLDILDASNELALFLARAVIDDVLAPLNLDEIGSRLPPKCSGSQTVRMARTLSSARHAGERLLRCWGGGTGWAVEDAKDKITKLLEEYESGGVVGEACHCIRDLGMPFFNHEVVKKALVMAMEKKNDRLLNLLQECFGEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFAYYVEHAQSKGWLLPSFDSSATDV* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2777 703 ProSiteProfiles MI domain profile. 286 407 IPR003891 -
Tpr5g2777 703 Pfam MA3 domain 585 692 IPR003891 -
Tpr5g2777 703 Pfam MA3 domain 123 234 IPR003891 -
Tpr5g2777 703 Pfam MA3 domain 287 398 IPR003891 -
Tpr5g2777 703 Pfam MA3 domain 422 531 IPR003891 -
Tpr5g2777 703 SMART ma3_7 123 234 IPR003891 -
Tpr5g2777 703 SMART ma3_7 287 398 IPR003891 -
Tpr5g2777 703 SMART ma3_7 421 532 IPR003891 -
Tpr5g2777 703 SMART ma3_7 584 693 IPR003891 -
Tpr5g2777 703 PANTHER PROGRAMMED CELL DEATH 4 1 695 IPR039778 GO:0045892
Tpr5g2777 703 Gene3D - 273 405 - -
Tpr5g2777 703 Gene3D - 571 700 - -
Tpr5g2777 703 SUPERFAMILY ARM repeat 580 698 IPR016024 -
Tpr5g2777 703 ProSiteProfiles MI domain profile. 420 541 IPR003891 -
Tpr5g2777 703 ProSiteProfiles MI domain profile. 122 243 IPR003891 -
Tpr5g2777 703 PANTHER PROGRAMMED CELL DEATH PROTEIN 4-LIKE 1 695 - -
Tpr5g2777 703 SUPERFAMILY ARM repeat 283 404 IPR016024 -
Tpr5g2777 703 ProSiteProfiles MI domain profile. 583 702 IPR003891 -
Tpr5g2777 703 SUPERFAMILY ARM repeat 120 280 IPR016024 -
Tpr5g2777 703 Gene3D - 115 263 - -
Tpr5g2777 703 Gene3D - 409 563 - -
Tpr5g2777 703 SUPERFAMILY ARM repeat 418 576 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2777 Tpr-Chr5 49890287 49894615 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2777 587 683 Eukaryotic Initiation Factors Gene Family AT5G57870 31.000 1.77e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2777 - - gmx:100809081 1206.82