Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2776 ATGGCTCAGTTACACAACTTTTTAGTTCAGTTTGAAAATTTTTGGACAACAAATGCCCTTGTTTTGGACATGTGGCAGATTTTAATGAAGGGTTATTATTGTCTTTACCAGGGTTTGAAATGTGGAAGGAGAATGGAGCATTCTGAAATCGATTTAGCTCCTATTTCCAACGGGGAACAACCCCAACTAGTTTCTCACGAAGATTCTTCTTCCCCTGTTGTTGATCATTCTCCACCGTCAGATCTCAATCAAACGGCTGAGAATCATATTGATCATGATGATACACTTGCTGTGGAGCTTCATGATAAGTTGGATTTGAAGATTGAAGATGAAAGGGTTGTTGAAACTGATGATAAAGTTTCCAACTTTAACGATGGTGGTGAAGTTTGCGTTGAAGAAGAATCTGTTAAGGGTGAAGTAGTAGTAGAAGAAGAAGAAGAAGAAGAAGAAGATTCTGTTAAAGTTGAAGCAGTGGAAGAAGAAGCTGAATCTGTTAAGGGTGAAAATGAAGAGGAATCTGTTAAGGGTGAAGTAGATGAAGAAGAAGAAGAAGAATCTGTTAAGGATGCAGTAGAAGAAGAATTTGTCAAGGGTGAAGAAGGGTTTGATGGAGATAGCAAGGGTTGGGATACTAATAGTTGGAATGAGAATGTGAATGAAGAGCTTGGTGGTGGTAGAGATGCTGATGGTTATGGTTATGGTGATGGTTATGGTGGTGGTTATGGTGATGGTTATGGCTATGGTGATGGTTATGGTTATGGTGATGTTGATGGAGTTGAAGAGAAGGAAGAGAAAAGTGGTGATGGGACCCACCAGTTCCCTTTGAGGCCTGAAGCTGAAGATTGTTCATTTTATATGAAGACTGGGAATTGCAAGTTTGGATTCAACTGCAGATTTAATCACCCTATTAGGAGGAAAAACCAGGCTGTTAGGGAGAAGGTACGAGAAAGAGAAAGAGAAGAACCGGCAGAAAATCCAGGCCAGACAGAATGCAAGTATTATCAAAGGTCCGGGGGTTGTAAGTTTGGAAAAGCTTGCAAGTTCAACCACACAAGAGGGTTCACAGCACCAATTTCAGAACTTAACTTTCTCGGCTTACCTATTCGTCCGGGAGAGAGAGAGTGCCCATATTACATGCGCACTGGCTCTTGTAAGTTTGGATCAAACTGTAGGTTTAATCATCCCGATCCTACAACTGTGGGAGGAGGTGATCCTCAATCAGGGTTTGGTAATGGAGGGTCCGCTGCACTAAGAAGTGTATCACAACAATCTTCTGCCTCATGGTCTTCTTCAAGAAAGTTGAACGAAACACCTTTTGTGCCATTGGTAATTACGCCTACTCAAGGACTTGCTCCCCAAAGTCCTGACTGGAATGGATATCAGGCACCTGGCTACTTATCTGAGAGGGTCATGCATCCGTCTTCTACATATGTCATGAACAACCCAACAATTGAAACAAATGTTTACATGCACCATCAAAAGCAGATGCCAATTGAAGTGTATCCAGAAAGGCCTGGTGAACCTGAATGCAGCTTCTTCTTAAAAACCGGGGATTGTAAGTTCAAATCTAATTGTAAGTTTCACCATCCAAAGAATCGAATTGCAAGATTGCCTCCTTGCATCCTCAGTGACAAGGGCCTGCCTTTGAGACCTGACCAGAGTGTCTGCTCGCACTATAGTCGTTATGGAATTTGCAAATTTGGACCAGCTTGTAGATTTGACCACCCAGAAAGTGCACTTCCCTTAATGATGCCTGGACTCGGACAGCAATCCTACGGAAACTCGGATAATGCTCAGGTGGCTGGGATGGGGGGAAGTGCAAGTGATGGGACAATTCAGCAATCTGTGTAA 1851 0.4263 MAQLHNFLVQFENFWTTNALVLDMWQILMKGYYCLYQGLKCGRRMEHSEIDLAPISNGEQPQLVSHEDSSSPVVDHSPPSDLNQTAENHIDHDDTLAVELHDKLDLKIEDERVVETDDKVSNFNDGGEVCVEEESVKGEVVVEEEEEEEEDSVKVEAVEEEAESVKGENEEESVKGEVDEEEEEESVKDAVEEEFVKGEEGFDGDSKGWDTNSWNENVNEELGGGRDADGYGYGDGYGGGYGDGYGYGDGYGYGDVDGVEEKEEKSGDGTHQFPLRPEAEDCSFYMKTGNCKFGFNCRFNHPIRRKNQAVREKVREREREEPAENPGQTECKYYQRSGGCKFGKACKFNHTRGFTAPISELNFLGLPIRPGERECPYYMRTGSCKFGSNCRFNHPDPTTVGGGDPQSGFGNGGSAALRSVSQQSSASWSSSRKLNETPFVPLVITPTQGLAPQSPDWNGYQAPGYLSERVMHPSSTYVMNNPTIETNVYMHHQKQMPIEVYPERPGEPECSFFLKTGDCKFKSNCKFHHPKNRIARLPPCILSDKGLPLRPDQSVCSHYSRYGICKFGPACRFDHPESALPLMMPGLGQQSYGNSDNAQVAGMGGSASDGTIQQSV* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2776 616 ProSiteProfiles Zinc finger C3H1-type profile. 369 397 IPR000571 GO:0046872
Tpr5g2776 616 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 53 616 - -
Tpr5g2776 616 ProSiteProfiles Zinc finger C3H1-type profile. 325 353 IPR000571 GO:0046872
Tpr5g2776 616 MobiDBLite consensus disorder prediction 158 173 - -
Tpr5g2776 616 MobiDBLite consensus disorder prediction 174 189 - -
Tpr5g2776 616 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 506 531 IPR000571 GO:0046872
Tpr5g2776 616 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 302 IPR000571 GO:0046872
Tpr5g2776 616 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 327 350 IPR000571 GO:0046872
Tpr5g2776 616 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 552 577 IPR000571 GO:0046872
Tpr5g2776 616 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 371 395 IPR000571 GO:0046872
Tpr5g2776 616 Coils Coil 141 175 - -
Tpr5g2776 616 MobiDBLite consensus disorder prediction 58 81 - -
Tpr5g2776 616 Gene3D - 255 314 - -
Tpr5g2776 616 ProSiteProfiles Zinc finger C3H1-type profile. 276 304 IPR000571 GO:0046872
Tpr5g2776 616 SUPERFAMILY CCCH zinc finger 551 580 IPR036855 GO:0046872
Tpr5g2776 616 MobiDBLite consensus disorder prediction 134 189 - -
Tpr5g2776 616 ProSiteProfiles Zinc finger C3H1-type profile. 550 578 IPR000571 GO:0046872
Tpr5g2776 616 Gene3D - 490 580 - -
Tpr5g2776 616 SUPERFAMILY CCCH zinc finger 329 352 IPR036855 GO:0046872
Tpr5g2776 616 SMART c3hfinal6 550 577 IPR000571 GO:0046872
Tpr5g2776 616 SMART c3hfinal6 276 303 IPR000571 GO:0046872
Tpr5g2776 616 SMART c3hfinal6 504 531 IPR000571 GO:0046872
Tpr5g2776 616 SMART c3hfinal6 325 352 IPR000571 GO:0046872
Tpr5g2776 616 SMART c3hfinal6 369 396 IPR000571 GO:0046872
Tpr5g2776 616 PANTHER PROTEIN PHOSPHATASE RELATED 53 616 - -
Tpr5g2776 616 SUPERFAMILY CCCH zinc finger 372 396 IPR036855 GO:0046872
Tpr5g2776 616 Gene3D - 321 402 - -
Tpr5g2776 616 SUPERFAMILY CCCH zinc finger 277 304 IPR036855 GO:0046872
Tpr5g2776 616 MobiDBLite consensus disorder prediction 138 157 - -
Tpr5g2776 616 MobiDBLite consensus disorder prediction 56 81 - -
Tpr5g2776 616 SUPERFAMILY CCCH zinc finger 508 533 IPR036855 GO:0046872
Tpr5g2776 616 ProSiteProfiles Zinc finger C3H1-type profile. 504 532 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2776 Tpr-Chr5 49874390 49882538 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2776 501 601 C2H2 Transcription Factor Family AT3G02830 46.078 3.69e-22 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr5g2776 zf-CCCH 2.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2776 - - mtr:MTR_4g104260 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2776 5 49874390 49882538 Tpr5g2776 5 49874390 49882538 PCT