Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2738 ATGGCGACGACGAGGTCACCCAATCGTTCACCAGACGAAACGGCGGATCCAACGCCGTTAATCGGAAGTTCATCTGATGAGTCAAACTCCGGACGGAGAATTCTCCGTGCGCCGAGTCTCCAACAAGCAGCGCGGTTTCTGAGACAAGCGAGTGGGCGGAGGTTGATGCGTGAGCCGTCGATGATGGTGAGAGAAACGGCGGCGGAACAATTGGAAGAGAGACAAAGCGATTGGGCTTATTCCAAACCGGTTGTGATTCTTGATATTCTTTGGAATTTTGCTTTTATTGTTGCTGCTGTTGCTGTGTTGATTTTGAGTATTGATGAGTCTCCTAGCTCGCCTCTTAGGTTGTGGATTTCAGGATATGCTTTACAGTGTGTTGTTCATGTTGTGTGTGTTTGTTTCGAGTTTCGGAGACGGATGCAGGTGCGGGAACAGTTGGTTATCAACGGTGGTAACGCCGTTGGGGGCGGTAGCGGTGGCAGTGGGGATTTGGGCTTTGATTCAATGGATGGTTCTGGACAGTATGTCAATTTGGAACAGAATGGAGACGATGGTTCTACAAGTAGCATGGCAAAGCATTTGGAATCAGCCAACACAATGTTCTCTTTTATTTGGTGGGTCATTGGATTCTATTGGGTATCAGCTGATGGTCAAGATTTGATCCATGATTCTCCTAACCTTTACTGGTTATGTATTGTCTTCCTGGGTTTTGATGTTCTCTTTGTCGTTTTCTGTATTGCGCTGGCATGCATCATTGGTATTGCTGTTTGCTGTTGTCTTCCGTGTATCATTGCGCTTCTGTATGCAGTTGCAGACCAGGAAGGGGCAACAAAGGAAGACATTGAGCAGTTGTCAAAATTCAAATTCCAAAGAAAAAGTAAGGAGAAGCTTGCTGGTAATACACAAGGACCTGTTGGAGGAATAATGATTGAATGTCAAGCTGATTCCCCAATTGAACGCGTGCTTGCTGATGAGGACGCGGAGTGTTGCATCTGCCTTTCTGCCTATGATGACGGGGTTGAACTAAGACAACTTCCTTGCGGTCACCATTTTCACTGTACCTGTGTGGACAAATGGCTGCAGATCAATGCTACTTGCCCCCTCTGCAAGTATAACATCTTGAAAAGTAGCAGACATGGTGAAGAGGAAGTATAG 1158 0.4646 MATTRSPNRSPDETADPTPLIGSSSDESNSGRRILRAPSLQQAARFLRQASGRRLMREPSMMVRETAAEQLEERQSDWAYSKPVVILDILWNFAFIVAAVAVLILSIDESPSSPLRLWISGYALQCVVHVVCVCFEFRRRMQVREQLVINGGNAVGGGSGGSGDLGFDSMDGSGQYVNLEQNGDDGSTSSMAKHLESANTMFSFIWWVIGFYWVSADGQDLIHDSPNLYWLCIVFLGFDVLFVVFCIALACIIGIAVCCCLPCIIALLYAVADQEGATKEDIEQLSKFKFQRKSKEKLAGNTQGPVGGIMIECQADSPIERVLADEDAECCICLSAYDDGVELRQLPCGHHFHCTCVDKWLQINATCPLCKYNILKSSRHGEEEV* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2738 385 PANTHER TARGET OF ERK KINASE MPK-1 3 385 - -
Tpr5g2738 385 MobiDBLite consensus disorder prediction 1 35 - -
Tpr5g2738 385 CDD RING-H2_RNF111_like 329 373 - -
Tpr5g2738 385 Pfam Ring finger domain 329 371 IPR001841 -
Tpr5g2738 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 378 IPR013083 -
Tpr5g2738 385 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 385 - -
Tpr5g2738 385 ProSiteProfiles Zinc finger RING-type profile. 330 371 IPR001841 -
Tpr5g2738 385 SMART ring_2 330 370 IPR001841 -
Tpr5g2738 385 SUPERFAMILY RING/U-box 320 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2738 Tpr-Chr5 49521125 49530816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2738 6 380 C3H Transcription Factor Family AT1G68070 46.966 4.46e-116 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2738 - - gmx:100779757 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2738 5 49521125 49530816 Tpr2g3856 2 41368359 41373314 PCT