Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2729 ATGTCTTCTTCAACTTCTTCTTCATCCAAAAGGCACCCAATATACCATGGCATTCGAACCCGATCAGGAAAATGGGTGACTGAAATCCGTGAGCCTCGGAAGACAAACCGCATATGGTTAGGCACATTCTCCACCCCTGAGATGGCAGCCGCGGCATATGATGTCGCGGCTTTGGCTCTCAAAGGCGGGGATGCTGTTCTAAACTTCCCTGCCTATGTAGGTAAGTATCCGGTGCCGGCGTCCAATTCATCGGACGACATCCGTGCCGCTGCCACTGCTGCAGCCGAATTAATGAAGGCTGAAGCCTTTAATGGTGCTGGCTTTGATATTAGTCCTTCGTATGAAACTGAGTTCCTTGATGAGGAAGCTATATTCTCCATGCCAAGATTGATGGTGGAAATGGCTGAGGGAATGCTGCTTTCTCCTCCTAGAATGAATCCACCACCGTCTGAGTACATGCCTGAATATTACACTTTGGGAGAAAGTTTGTGGAACTATTAA 501 0.483 MSSSTSSSSKRHPIYHGIRTRSGKWVTEIREPRKTNRIWLGTFSTPEMAAAAYDVAALALKGGDAVLNFPAYVGKYPVPASNSSDDIRAAATAAAELMKAEAFNGAGFDISPSYETEFLDEEAIFSMPRLMVEMAEGMLLSPPRMNPPPSEYMPEYYTLGESLWNY* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2729 166 PANTHER ETHYLENE RESPONSE FACTOR 2 166 - -
Tpr5g2729 166 Pfam AP2 domain 15 62 IPR001471 GO:0003700|GO:0006355
Tpr5g2729 166 SUPERFAMILY DNA-binding domain 14 71 IPR016177 GO:0003677
Tpr5g2729 166 CDD AP2 13 71 IPR001471 GO:0003700|GO:0006355
Tpr5g2729 166 SMART rav1_2 14 78 IPR001471 GO:0003700|GO:0006355
Tpr5g2729 166 ProSiteProfiles AP2/ERF domain profile. 14 70 IPR001471 GO:0003700|GO:0006355
Tpr5g2729 166 Gene3D AP2/ERF domain 14 72 IPR036955 GO:0003700|GO:0006355
Tpr5g2729 166 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2729 Tpr-Chr5 49460191 49461255 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2729 9 166 AP2-EREBP Transcription Factor Family AT5G52020 54.857 1.66e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr5g2729 AP2 9.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2729 - - gmx:100778793 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2729 5 49460191 49461255 Tpr5g2729 5 49460191 49461255 ECH