Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2728 ATGATGAAATCATCATCATCACTTGATGAGTCTAATTACCTTTCATACTCAACCTCATCATCAGAAGCAAGTTGCTCCGAAGAATTCTTGTTAGCTTCGGAGCAACCAAAGAAGAAAGCGGGGAGACGAAAATTTAAGGAAACAAGACATCCAGTATATAGAGGAATACGAAGAAGAAACAATAACAAATGGGTTTGTGAAGTTCGTGTTCCTAACGATAAATCCACTAGGATTTGGTTAGGAACATATCCAACACCTGAAATGGCGGCACGTGCACATGATGTTGCTGCTTTGGCACTTCGTGGTAAATCAGCTTGTCTTAACTTTGCTGACTCGGCTTGGCGGTTGACGTTGCCGGTGTCTACTGATCCGAAGGAGATTAGGAAAATGGCGGCCGAAGCTGCTTTGGCATTTGCTGTTGAAGATGGTAACACTAACACAGAACAACTTGTAATTACTGATTGTGATGTAACTGATGTTAATAGCATTGGCGTTTTGGAAGATGATGATAAAATTTTGCAGGGACTGTGTGTGGAAGTTCCGGAGCTGGAGCAGGACAAGTTGCATGATTGGATTCGGAATATGGCGGATGAGCCTTTACAATCTCCGGCGTGTTCATTTATAAGATCATATGGTAGAGATCACTGGAATAATGTTGATGTTGATGTTGAAGAAGTGTCCTTGTGGAGCTTTACCATCTAA 702 0.4188 MMKSSSSLDESNYLSYSTSSSEASCSEEFLLASEQPKKKAGRRKFKETRHPVYRGIRRRNNNKWVCEVRVPNDKSTRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLTLPVSTDPKEIRKMAAEAALAFAVEDGNTNTEQLVITDCDVTDVNSIGVLEDDDKILQGLCVEVPELEQDKLHDWIRNMADEPLQSPACSFIRSYGRDHWNNVDVDVEEVSLWSFTI* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2728 233 ProSiteProfiles AP2/ERF domain profile. 52 110 IPR001471 GO:0003700|GO:0006355
Tpr5g2728 233 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Tpr5g2728 233 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Tpr5g2728 233 SMART rav1_2 52 116 IPR001471 GO:0003700|GO:0006355
Tpr5g2728 233 SUPERFAMILY DNA-binding domain 52 112 IPR016177 GO:0003677
Tpr5g2728 233 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 4 233 - -
Tpr5g2728 233 Gene3D AP2/ERF domain 52 111 IPR036955 GO:0003700|GO:0006355
Tpr5g2728 233 CDD AP2 53 112 IPR001471 GO:0003700|GO:0006355
Tpr5g2728 233 Pfam AP2 domain 51 102 IPR001471 GO:0003700|GO:0006355
Tpr5g2728 233 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 4 233 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2728 Tpr-Chr5 49456704 49457559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2728 6 231 AP2-EREBP Transcription Factor Family AT5G51990 49.789 7.08e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr5g2728 AP2 4.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2728 - - gmx:100779318 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2728 5 49456704 49457559 Tpr2g3846 2 41255380 41256187 PCT