Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2719 ATGGTGAGAGGAAAAACTCAAATGAAGAGAATTGAAAATGAGTCAAATAGACAAGTAACTTTTTCGAAGAGAAGAAATGGGTTGCTTAAAAAGGCTTTTGAACTTTCAGTTCTTTGTGATGCTGAAGTAGCACTCATCGTTTTCTCTACCACAGGGAAACTCTATGAGTTTTCAAGTACTTCAAGTATAAACAAAACAGTGGAACGCTATCAAAGTAAAGTCAAAGACTTGGCTCTCGGCATCATAGGACTCCAAGAAAATACACAGCACCAAAAGGAATGTGATATCAACTCGACAAAGAAGTTGGAGAACTTGGAACTTTCAAAAAGGAAGCTATTGGGAGATGAATTGGATACATGTGCTATTGATGAATTGCAAAAGATTGAAAATCAACTTGAACGCAGCTTAAGCAAAATTAGGGCAAGAAAGGATCAACTGTTCAAGGAACAACTTGAAAAGCTAAGAGAAAAGGAAAGGGACTTACTTGAAGAAAATAGACGCTTATGCGAGCAGTATGGAATTGAACAAGATGGTTGTCTAAGTAAACAGCAAGATATCGAACATGTAACGGAGAGTCTGGAAGGCGAGGAGGAGGTGGAGACGGAGTTGTTCATAGGGCGACCTGAGAAACGAATGAATTGA 642 0.3863 MVRGKTQMKRIENESNRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTTGKLYEFSSTSSINKTVERYQSKVKDLALGIIGLQENTQHQKECDINSTKKLENLELSKRKLLGDELDTCAIDELQKIENQLERSLSKIRARKDQLFKEQLEKLREKERDLLEENRRLCEQYGIEQDGCLSKQQDIEHVTESLEGEEEVETELFIGRPEKRMN* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2719 213 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Tpr5g2719 213 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr5g2719 213 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Tpr5g2719 213 Coils Coil 122 171 - -
Tpr5g2719 213 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr5g2719 213 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr5g2719 213 PANTHER MADS-BOX PROTEIN SOC1 1 209 - -
Tpr5g2719 213 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr5g2719 213 Pfam K-box region 99 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr5g2719 213 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr5g2719 213 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr5g2719 213 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr5g2719 213 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977|GO:0045944
Tpr5g2719 213 PANTHER MADS BOX PROTEIN 1 209 - -
Tpr5g2719 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2719 Tpr-Chr5 49361991 49368331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2719 1 211 MADS-box Gene Family AT4G22950 56.132 2.71e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr5g2719 K-box 1.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2719 - - mtr:MTR_4g102530 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2719 5 49361991 49368331 Tpr5g2719 5 49361991 49368331 ECH
Tpr5g2719 5 49361991 49368331 Tpr7g1778 7 20506415 20513296 ECH
Tpr5g2719 5 49361991 49368331 Tpr6g1704 6 18347050 18353203 ECH