Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2712 ATGGGAAGACAACCTTGTTGTGACAAACTTGGTGTGAAGAAAGGTCCATGGACAGCTGAAGAAGACAAGAAACTCATCAATTTCATTCTTACCAATGGACAATGTTGTTGGCGTGCCGTGCCTAAACTTGCTGGACTTAGGCGTTGTGGTAAGAGTTGTCGTCTTCGTTGGACTAATTATCTTCGTCCTGATTTGAAGAGAGGTCTTCTTACTGAGGTAGAGGAGCAGCTTGTTATTGATCTTCATGCCCGTCTTGGCAACAGGTGGTCGAAGATTGCTTCCAGGTTACCCGGGAGAACAGATAATGAGATTAAAAATCATTGGAACACACACATCAAGAAAAAACTCATTAAAATGGGAATTGATCCCATTACTCATGAGCCTTTGAATAAACAAGCCTCATCCAATGATAGTTCATCATCCCCTGCAGAGAATTTGTCACAACCAGACAAAAACCATGAAGAGAAGGAAATTGATGGAATTGTCAACTCAGATGAGAATTCAAGCTCATCCCCAACTGAAAATTCTTCTGGAGAAGAATCCCTTTTGCTAGATAGCATTTGCAGTGATGATTCTCTAATGAATAGTCTATGGTTGGATGAAACACCATTGGTTGAAGCACTTTGGGAAATGGACACTACACCTATAACAGAAATAGAGAATACCAAAATTGAGATGAATTTTGTGCCTTCTTGGGAGGATAATTGTTCTTGGCTATTGGATTGTCAAGACTTTGGTATTCAGGATTTTGGATTTAATTGCTTCAATGAGATAGAATCAAGTATGCAAACTATAGACATGAAGGAAAATATTAAACATTAG 822 0.3905 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEVEEQLVIDLHARLGNRWSKIASRLPGRTDNEIKNHWNTHIKKKLIKMGIDPITHEPLNKQASSNDSSSSPAENLSQPDKNHEEKEIDGIVNSDENSSSSPTENSSGEESLLLDSICSDDSLMNSLWLDETPLVEALWEMDTTPITEIENTKIEMNFVPSWEDNCSWLLDCQDFGIQDFGFNCFNEIESSMQTIDMKENIKH* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2712 273 MobiDBLite consensus disorder prediction 161 180 - -
Tpr5g2712 273 MobiDBLite consensus disorder prediction 130 147 - -
Tpr5g2712 273 SMART sant 13 63 IPR001005 -
Tpr5g2712 273 SMART sant 66 114 IPR001005 -
Tpr5g2712 273 CDD SANT 16 61 IPR001005 -
Tpr5g2712 273 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tpr5g2712 273 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr5g2712 273 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 258 - -
Tpr5g2712 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr5g2712 273 CDD SANT 71 112 IPR001005 -
Tpr5g2712 273 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr5g2712 273 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Tpr5g2712 273 Gene3D - 70 159 - -
Tpr5g2712 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr5g2712 273 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr5g2712 273 MobiDBLite consensus disorder prediction 163 180 - -
Tpr5g2712 273 Gene3D - 12 67 - -
Tpr5g2712 273 MobiDBLite consensus disorder prediction 130 154 - -
Tpr5g2712 273 PANTHER PROTEIN ODORANT1-LIKE 2 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2712 Tpr-Chr5 49291421 49293259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2712 1 264 MYB Transcription Factor Family AT4G12350 59.364 7.07e-102 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr5g2712 Myb_DNA-binding 2.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2712 K09422 - gmx:100786965 436.417