Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2698 ATGGCAGGAGCCTCTAATCAATCTTCGGCCACTTCCGAAAGTATTTCCAACAAAGTTTGTGAAGACGAGAACAATGTCAACAACGATGAGGTGACAATGAAGGGTAAGGAAGTTTTAATATCTGAACAACATCAACCTTTGAAAAGCAATACCGACTTGCTTCTTGAATTCGTCAAGCTCTCTAATGATGATTCGATTCCTAGGTCGAATGTGCGGGAACATGATTTTTTTACCCCCTCGAAGGACTTGGGGGAGAGTTCATCTTCATTACCTTGGGCTAATAATAAGCCCAAGCCCAACAATGAAGAGAACACAAAAGAAAAATCTTCTGATTCGAGAAGTGATTTCTCTTGCAACTTTTGCAAGAGACAGTTTTCTTCTTCGCAAGCTTTAGGAGGGCACCAAAATGCTCATAAGCGTGAACGCGCATTTGCAAAGCATCACCAAGAGATTCAAAATGGTTTTGGTACCCCTCACTATCCTTTTCCTTACTACACAAGTTATCCAAGTCTTTCTTCATCTAATTATGGAATTGGATCTTATAATAAAGCACTTGGAATTAGGACAGACTCCATGATTCAAAAGCCAAATTATTCGTGGACGCCACCTCCTTATAGGTTCGGTTCAACTCCTAAGTGGACACCAATGCAAGAGATGATGAGAAACTTTTCTTCACTTGATAGATTGAAGATTGAGAGTCTTAATGCAAATAATGAAAAAAGTACACCTAATAATATGATGAAATTAGATGTTGGAGAGTCTTCTAGAAATGTTGATACGAAGTCAAATTCAGACGTCGACAAGTCAACTGTGGTTGCCGATGGTAGTGATCATCGTGATACGAATAAGAAAGAAGCCTCCGATTCTATATCTACTGGGCTTGATTTGTCACTTAAGCTTTGA 903 0.3931 MAGASNQSSATSESISNKVCEDENNVNNDEVTMKGKEVLISEQHQPLKSNTDLLLEFVKLSNDDSIPRSNVREHDFFTPSKDLGESSSSLPWANNKPKPNNEENTKEKSSDSRSDFSCNFCKRQFSSSQALGGHQNAHKRERAFAKHHQEIQNGFGTPHYPFPYYTSYPSLSSSNYGIGSYNKALGIRTDSMIQKPNYSWTPPPYRFGSTPKWTPMQEMMRNFSSLDRLKIESLNANNEKSTPNNMMKLDVGESSRNVDTKSNSDVDKSTVVADGSDHRDTNKKEASDSISTGLDLSLKL* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2698 300 MobiDBLite consensus disorder prediction 1 30 - -
Tpr5g2698 300 MobiDBLite consensus disorder prediction 271 286 - -
Tpr5g2698 300 MobiDBLite consensus disorder prediction 234 300 - -
Tpr5g2698 300 MobiDBLite consensus disorder prediction 234 270 - -
Tpr5g2698 300 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 4 300 - -
Tpr5g2698 300 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Tpr5g2698 300 PANTHER ZINC FINGER PROTEIN JAGGED 4 300 IPR045320 GO:0003700
Tpr5g2698 300 Gene3D Classic Zinc Finger 98 155 - -
Tpr5g2698 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 143 IPR013087 -
Tpr5g2698 300 SUPERFAMILY beta-beta-alpha zinc fingers 114 144 IPR036236 -
Tpr5g2698 300 MobiDBLite consensus disorder prediction 81 99 - -
Tpr5g2698 300 Pfam C2H2-type zinc finger 116 140 - -
Tpr5g2698 300 MobiDBLite consensus disorder prediction 1 22 - -
Tpr5g2698 300 MobiDBLite consensus disorder prediction 71 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2698 Tpr-Chr5 49181066 49181968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2698 116 196 C2H2 Transcription Factor Family AT5G10970 47.059 2.09e-16 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr5g2698 zf-C2H2_6 2.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2698 - - cam:101494832 265.003