Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2680 ATGAACACATTTTCACACGTACCTCCCGGGTTTCGTTTTCATCCAACTGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAGGTATTGTCTAAAAAGATTGATCTAGATGTCATCAAAGACGTTGATCTCTACAAAATTGAACCATGGGATCTTCAAGAATTATGCAAAATAGGAAGTGATGAACAAAATGACTGGTATTTTTTTAGTCATAAGGATAAGAAGTATCCAACAGGAACTCGAACGAATAGAGCAACAAAAGCAGGATTCTGGAAAGCAACTGGAAGAGATAAGGCAATATACTCAAAACAATTCCTAGTTGGAATGAGAAAGACTCTAGTGTTTTATAAAGGACGTGCCCCTAATGGACAAAAATCTGATTGGATCATGCATGAGTATCGCCTAGAAACTAATCAAAATGGAACTTCTCAGGAAGAAGGGTGGGTTGTATGCAGAGTATTCAAGAAAAGAATGACAACAGTACAGAAAATGAGTGAGTATGATCAATCACCATGTAATTGGTATGATGATCAAGTTTCCTTCATGCCTGATCTTGAATCTCCAACTTCAACCAATCCTCACCAAAATTACACTTCATCATACCATTCCTGCAAACCAGAGCTAGAATTAATGCAATACCAACACCATAATCATGCTAATTTTATCCAACTTCCACATCTTGAAACCTCCAAAATCACTCAATCATCGATTATCCCTTATAATCATGCTCATGCAAACAACAATAACATTAATTCACAACAGATGCAATATTTGCAATACCATCAACAAAATCTTCACTCGATATACGGCGGCGGCGGCGGTGGTGGTGGAAGTATTACTGGTAATAATGATGAACAAGTTACTGATTGGAGAGTTCTTGATAAATTTGTTGCTTCTCAGCTAAGTCATGAAGATAATAATAATAATCATAATCATAATCAAGATCATGTTTCTAATAAACAAGCTAGTTCTTTCTCTAATTCAGAAACTATTCTTCAAGTGGCTGAACAAATCACTCTTCTTGCAAATGGATCCAAAAAGAATGAAGTTTCTGAGGAACATGCTTCAACTTCTACATCCAGTTGCCACATGGAACTTTGGAAGTGA 1107 0.3622 MNTFSHVPPGFRFHPTDEELVDYYLRKKVLSKKIDLDVIKDVDLYKIEPWDLQELCKIGSDEQNDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKQFLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNQNGTSQEEGWVVCRVFKKRMTTVQKMSEYDQSPCNWYDDQVSFMPDLESPTSTNPHQNYTSSYHSCKPELELMQYQHHNHANFIQLPHLETSKITQSSIIPYNHAHANNNNINSQQMQYLQYHQQNLHSIYGGGGGGGGSITGNNDEQVTDWRVLDKFVASQLSHEDNNNNHNHNQDHVSNKQASSFSNSETILQVAEQITLLANGSKKNEVSEEHASTSTSSCHMELWK* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2680 368 MobiDBLite consensus disorder prediction 354 368 - -
Tpr5g2680 368 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Tpr5g2680 368 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 328 - -
Tpr5g2680 368 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 328 - -
Tpr5g2680 368 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Tpr5g2680 368 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Tpr5g2680 368 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Tpr5g2680 368 MobiDBLite consensus disorder prediction 345 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2680 Tpr-Chr5 49028428 49033981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2680 1 368 NAC Transcription Factor Family AT1G12260 54.595 5.38e-136 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr5g2680 NAM 1.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2680 - - gmx:100797916 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2680 5 49028428 49033981 Tpr5g2680 5 49028428 49033981 ECH
Tpr2g3790 2 40813734 40818242 Tpr5g2680 5 49028428 49033981 PCT