Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2679 ATGTCATCATCCTCTTCTTCATTATCTTCCTTGGACCACCTCCCTTCTTCCGAGCAACTTTGTTATGTCCACTGCAACATTTGTGACACCATCCTTGCTGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACTGTGACTGTGAGATGTGGTCATTGCACCAATCTTTTACCAGTCAACATGCGTGCATTGCTTCTTCCTTCTCCAAATCAGTTTCATTTGGGACATTCTTTCTTCTCCCCAACTCATAACCTTCTTGAGGAGATGCCAAACCCAGCTCCAAATTTTCTGATGAACCATACAAATGCACCAAATGAGTTCTCTATGCCTCCTAGGGTTGTAGCTGATGAGCTTCCAAGGCCACCAATCATCAACAGACCTCCAGAGAAAAGGCAGAGAGTTCCTTCAGCGTACAATCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCTGATATAACCCACAGGGAAGCCTTCAGCGCTGCTGCCAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCTGATCAGACTATAAAGAAGACAAATGTGTGCCAGCAGGAAGGAGATGATCAGGTTCTGATGAAAGATGGAGGGTTTTATGCTTCAGCTAATCTTGGTGTTTCTCCTTACTAA 651 0.4516 MSSSSSSLSSLDHLPSSEQLCYVHCNICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSFFSPTHNLLEEMPNPAPNFLMNHTNAPNEFSMPPRVVADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTIKKTNVCQQEGDDQVLMKDGGFYASANLGVSPY* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2679 216 PANTHER PROTEIN YABBY 6-RELATED 1 214 IPR006780 GO:0007275
Tpr5g2679 216 Gene3D High mobility group box domain 123 174 IPR036910 -
Tpr5g2679 216 SUPERFAMILY HMG-box 122 171 IPR036910 -
Tpr5g2679 216 Pfam YABBY protein 16 178 IPR006780 GO:0007275
Tpr5g2679 216 PANTHER PROTEIN YABBY 4 1 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2679 Tpr-Chr5 49008968 49012086 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2679 27 214 C2C2-YABBY Transcription Factor Family AT4G00180 59.809 1.72e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Tpr5g2679 YABBY 4.8e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2679 K25796 - gmx:100798441 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2679 5 49008968 49012086 Tpr5g2679 5 49008968 49012086 ECH