Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2676 ATGAACAATGTTAACATCAACAAAAACAACAACACAACTCAAGCTTGTGCTGCATGTAAATACCAACGTAGAAAATGTGCACCTGATTGCATATTAGCACCTTATTTTCCTCATGATCGTCAAAGACAATTCCTTAATGCACACAAATTATTTGGTGTTAGTAACATTAGTAAAATCATAAAAAATCTTGATCCTCCTCTTAAAGATCAAGCCATGAGAACAATCATTTTTCAATCTGATATGCGAGCCAATGACCCTGTTGGTGGTTGTTATAAATATATTCAAGATCTTCAAACCCAGATTGAATATTGTAAAATAGAACTTGATCTTGTTCTTCAACAACTCGCATTTTTTCGAGAACAATCTCATCAACATCAACAACAAGAAGTAGTTAATTATGGTGATCAAGTTCTTATGAATTCAGATTCATTGTTAGGTTTTTATAATCCATCTGGATCTATTGTTTCGGCTACTGCACCGGCTCATTATCATTACAATGTTCAACAACAGGTTGTGCCACAATTACAAGAACATGAACAAGAACAATACATTATGATGAATGAAAGTAATAGTAGTATTAATAGTAATACTCCTTTGCAACAACATATTAATAATTGGGAGGCTATGCAAAGTTCTATTTCTCTATCATCTTTGTCATTGCATGGACAAAGTAGTAATGCTAGTGATGAGTATGATCATAAGCCAATTCTTGATATACCTTGTGATGAAAGAAATGAATTAGGGTTCGACTCTGGAGAAATACTTCACCACAGTGATGAAGCAGTTTTGTTTAAGATAAATGATGGAGTAATTAAAGCAGAAGGTGACTACATTCAACAAACACAAGCTCAAGCACAAGATCATGATCTAAAAGGAGCAGCAACATTGTTTACTCTGACAAATTGTACTAGTTGA 915 0.3344 MNNVNINKNNNTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNISKIIKNLDPPLKDQAMRTIIFQSDMRANDPVGGCYKYIQDLQTQIEYCKIELDLVLQQLAFFREQSHQHQQQEVVNYGDQVLMNSDSLLGFYNPSGSIVSATAPAHYHYNVQQQVVPQLQEHEQEQYIMMNESNSSINSNTPLQQHINNWEAMQSSISLSSLSLHGQSSNASDEYDHKPILDIPCDERNELGFDSGEILHHSDEAVLFKINDGVIKAEGDYIQQTQAQAQDHDLKGAATLFTLTNCTS* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2676 304 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 243 - -
Tpr5g2676 304 Pfam Lateral organ boundaries (LOB) domain 15 110 IPR004883 -
Tpr5g2676 304 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Tpr5g2676 304 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 10 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2676 Tpr-Chr5 48971760 48973498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2676 14 129 AS2 family AT3G13850 76.724 1.47e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr5g2676 LOB 2.3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2676 - - pvu:PHAVU_010G138500g 347.436