Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2632 ATGCTTGTTAAGAGAGAAAATAAGAAACAAAGAGTAAAGAGAAACAAAACAAAAAGTGTTCAAGTTGGTGTTGCTGCTATGGAAAGACACAAATGCAAGCTATGTTCAAGAACATTTGGTAATGGAAGAGCACTTGGTGGTCACATGAAAGCTCATCTTGCAACAATTAAGTCTCAAAAACAACAATTCACTCAATTTGCTTCTTTTTCATCTTCATCAGAATCAGAACATGAAGAAGAAAAAACTTTGATTAATTATGTTTTGAGAGAGAATCCAAAGAAAAGTCTGAAAATTGTAGATCCTGAATTTTCTTTCTTACCTGATCAGACTGAGTCTGTTATTGTTCAAGATAGAGAAAGTGAGACTGAGTCAAAAAACAACCCGACTCGTCAACAACGTTCCAAACGGAACAGAAAACATAACAACAACAACAACAACAAGAATTTTCCAGAAGGGAAAAAATCGAAGCCGAGTTTTATGATGTTAACAGCACCACCACCATTCAATGATCAAGAACCTGTTAGTTCAGTTTCTGATACTTCTCCTGAAGAAGATGTTGCTATGTGTCTGATGATGCTTTCTAGAGACAAATGGAGTAGGGAGATGAACATTAACAATGTGGTTGAAGAAGAGGGATCGGTGGAAAAAACATCGAAGTTGTTGAAACGTGTTCGCGGGAAGCATTTATGTGAAAATTGTCGAAAATCTTTTCGATCTTCAAGAGCATTAGGAAGTCATAGAAGTGTTTGTTGTCGCGATGAAGCGAAAAATGGTAATGGTAAAAATGATGATAAGATTTTTGAATGTCCATTTTGTTTTAAGGTTTTTGGTTCTGGTCAAGCACTTGGTGGTCACAAGAGATCTCATCTCATGATCCCTTCTTCATCAAATTCGACTCCTAATGTTAATGCTAACGCTAATGTTGAAGCTAATGTTGATGTTTCTGTTAGATTCAAAGAAAGTTTCATAGATCTCAATTTGCCAGCACCACTTGAAGAAGAAGAAGATGATGATGATCTTAGTGTTGTTTCTGAAGCCTAA 1041 0.3593 MLVKRENKKQRVKRNKTKSVQVGVAAMERHKCKLCSRTFGNGRALGGHMKAHLATIKSQKQQFTQFASFSSSSESEHEEEKTLINYVLRENPKKSLKIVDPEFSFLPDQTESVIVQDRESETESKNNPTRQQRSKRNRKHNNNNNNKNFPEGKKSKPSFMMLTAPPPFNDQEPVSSVSDTSPEEDVAMCLMMLSRDKWSREMNINNVVEEEGSVEKTSKLLKRVRGKHLCENCRKSFRSSRALGSHRSVCCRDEAKNGNGKNDDKIFECPFCFKVFGSGQALGGHKRSHLMIPSSSNSTPNVNANANVEANVDVSVRFKESFIDLNLPAPLEEEEDDDDLSVVSEA* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2632 346 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 27 346 - -
Tpr5g2632 346 SMART c2h2final6 30 52 IPR013087 -
Tpr5g2632 346 SMART c2h2final6 228 248 IPR013087 -
Tpr5g2632 346 SMART c2h2final6 267 289 IPR013087 -
Tpr5g2632 346 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 27 346 IPR044303 GO:0006355
Tpr5g2632 346 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Tpr5g2632 346 MobiDBLite consensus disorder prediction 114 130 - -
Tpr5g2632 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 52 IPR013087 -
Tpr5g2632 346 Pfam C2H2-type zinc finger 267 289 - -
Tpr5g2632 346 Pfam C2H2-type zinc finger 228 247 - -
Tpr5g2632 346 Pfam C2H2-type zinc finger 29 54 - -
Tpr5g2632 346 ProSitePatterns Zinc finger C2H2 type domain signature. 269 289 IPR013087 -
Tpr5g2632 346 SUPERFAMILY beta-beta-alpha zinc fingers 228 289 IPR036236 -
Tpr5g2632 346 Gene3D Classic Zinc Finger 225 289 - -
Tpr5g2632 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 267 289 IPR013087 -
Tpr5g2632 346 MobiDBLite consensus disorder prediction 109 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2632 Tpr-Chr5 48535071 48536256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2632 27 343 C2H2 Transcription Factor Family AT3G60580 37.500 1.05e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr5g2632 zf-C2H2_6 1.4e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2632 - - vun:114173003 286.189