Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2619 ATGGAAAGGGAAGACTCTTTCCAAACTCATGAACTTTGTCTTCAACCAACCACTTCCTTATCTTCATCCATTATTGTCTCAACCTCTAATTCCTCTTCAGAAGAAGAAGCTACTAATATTAAAACCAAAAAATTAAGCAATAGTACCAAAAAAGAAAAGAAAAAGAAGAAAGTGGCAATGGTGAATAGAGTGATTCATAAAAATGATGATATGAAGCATCCAACATATAGAGGAGTAAGAATGCGTCAATGGGGCAAATGGGTATCAGAAATTAGAGAGCCAAGAAAAAAATCAAGAATTTGGCTTGGAACTTTTCCGACTCCTGATATGGCGGCTCGAGCTCATGATGTCGCGGCTCTTACTATCAAAGGCTCTTCGGCTTACCTTAATTTTCCTGAATTAGCTACGATGTTGCCACGGCCAGCTAGTGCCTCTCCTAAGGATATTCAAATAGCAGCCGCCAAAGCAGCCGCGACTATTTACAATCATCCAACCAATCAAGTTGAATTGGAAGCTGAAGTCGAGCCGAGCCAAGTTGTTTCTTCTTCTTCTTCTTCACCTTCTTCTTCGGGCCATAGTGAAGGGTCATCGTTGAATGGTGAGGATGACATGTTTTTGAACCTTCCCGATCTCACACTCGATTTAAGACATAATAGTGATGATGGGTTTTATTACTCCTCGCCAGCTTGGCTCGTAACGGGAGCTCAATATATAGACTCGGGTTTTCGGCTCGAAGACCCTTTTATGTGGAACTAG 756 0.414 MEREDSFQTHELCLQPTTSLSSSIIVSTSNSSSEEEATNIKTKKLSNSTKKEKKKKKVAMVNRVIHKNDDMKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAYLNFPELATMLPRPASASPKDIQIAAAKAAATIYNHPTNQVELEAEVEPSQVVSSSSSSPSSSGHSEGSSLNGEDDMFLNLPDLTLDLRHNSDDGFYYSSPAWLVTGAQYIDSGFRLEDPFMWN* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2619 251 MobiDBLite consensus disorder prediction 20 36 - -
Tpr5g2619 251 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 23 237 - -
Tpr5g2619 251 MobiDBLite consensus disorder prediction 20 58 - -
Tpr5g2619 251 MobiDBLite consensus disorder prediction 176 197 - -
Tpr5g2619 251 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Tpr5g2619 251 Gene3D AP2/ERF domain 75 133 IPR036955 GO:0003700|GO:0006355
Tpr5g2619 251 CDD AP2 76 134 IPR001471 GO:0003700|GO:0006355
Tpr5g2619 251 SUPERFAMILY DNA-binding domain 75 133 IPR016177 GO:0003677
Tpr5g2619 251 SMART rav1_2 75 138 IPR001471 GO:0003700|GO:0006355
Tpr5g2619 251 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Tpr5g2619 251 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Tpr5g2619 251 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 23 237 - -
Tpr5g2619 251 ProSiteProfiles AP2/ERF domain profile. 75 132 IPR001471 GO:0003700|GO:0006355
Tpr5g2619 251 MobiDBLite consensus disorder prediction 173 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2619 Tpr-Chr5 48393595 48394635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2619 68 249 AP2-EREBP Transcription Factor Family AT2G44940 49.510 2.03e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr5g2619 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2619 - - mtr:MTR_4g100650 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5527 2 64030940 64031895 Tpr5g2619 5 48393595 48394635 PCT