Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2618 ATGGATGAGAGCAACCATGAAATGGTTAATCTTTTAACACAACAAATGGGTACTGTGTTTAATCCATTAATTCAGAATACCAACGAGAGTTATCAAATGTTGGCATTTCAAATGAGTCGAATTGCAGATTTTTTTGGGACACCCCCACCACCTCCTAGAGTAAATCCCATTACTCCACAAGTTAATCAAATGCCTCAATTAGTAAATCAAAACCCTCCTGTTATGAACCCAAATCCACAAGTGGTACATCAGAACCCTCCAGTGGTAATGGTTAGGAGGAACCAGGATCCTGATGAGGTAGTGCGAGAGGTGCAAAACAATAATTTGCTTGGCCAACACAATTTGGCTAACATGGTCGAAACGATTTTGGCCCAGAACGGCCTAAACACGGGTTGTCGAAGGCCAAACTTTGTCTCTGCCTTCACTGAATATGTGCTGCAAACCGAGTTACCAAGAGGTTGGAAAGTCCCAAAATACACTAAGTTTGCTGGGGATACTAATGAATCAACCGTAGAACATATTGCCAGGTATCTAGCTGAGTCTGGGAATTTGGCGAATAATGAAAATTTGCGAATGAAGTATTTTCCTAATTCGCTTACCAAGAATGCATTTACTTGGTTTACAACTTTGCCTCCCAATTCGATCAATAGTTGGGCCCAATTGGAAAGGATTTTCCACGAGCAATTTTATATGGGCCAAACCAAGATAAGTCTGAAAGAGTTAGCCAGTGTAAAAAGAAAAAACCAAGAGTCAATTGATGACTATTTAAATAGGTTTCGTTTGCTGAAATCAGACATGTCACAGTTGGCTGACAGAGTGAGACAAATCGAAAGGTTAAAAGCTGAAAAAGTTAGAAATTCTAAGTTTCAGAAAAAGAAAGAAATAGGTTTTGTTGATTCCTATGATAATGAAATCGATTATGAAATGAGTGATGAATACTTAGATTTCGATGATAGTGATATTAATGTGGCTGAATTAAAGCCTGGGCCTCCTTACACTTGCAAATTGTTGAGGCCGTCGAATGGAAAAAATCCTATCGAACCAAAAAATGATAAGTTTGTTACAAAGACTTATACTTTCGACATTACTAAATGTGATGAGATTTTTGATTTATTGGTGACTGACGGCCAAATTATTGTGCCAAAAGATATGAAAATACCACCAATAGAACAAAGAAAGAAAAGAGGTTATTGTAAGTTTCATAATTATTTGGGACATAAAACTTATCAATGTGTTGTTTTCAGGGATTTGGTGCAAAAAGCGCTGAATGAAGGAAGGCTGAAGTATGCTGATAAGGCAAAGCCTCCAATGAAGGTAGATTCAGATCCCTTGCCACCTGCAGACGCTACCTATGTCGAAGTCTATGACTGCAACATGGTTGAAAGTCTCGCATTGAGTAGAGAAAAGTGGTCTTTGATAGCTGGGAGGCTTCCAGGACGAACGGACAATGAAATTAAAAACTATTGGAATTCTCATTTGTGCAAAAAAGTTAATCAAATAGGGGAAAAACCAGAAACTTCCACTGCACAAGAAACTACAGCTCAGGACAATGTTGCTGGGGATAGTGGTATGTTAGAGAATAAAGATTCAGTTAATGGAAGTATTGATTCAGATGTTATCTTTGATGTGAATGAATTTTTAGACTTTTCTACTGAAGAATCATTTGAATTTGACTGGGTGAATAAATTCTTGGAGTTAGACCAGATTCAGTTTATTGAGAACACAGAAAGATCTGAGTGA 1740 0.377 MDESNHEMVNLLTQQMGTVFNPLIQNTNESYQMLAFQMSRIADFFGTPPPPPRVNPITPQVNQMPQLVNQNPPVMNPNPQVVHQNPPVVMVRRNQDPDEVVREVQNNNLLGQHNLANMVETILAQNGLNTGCRRPNFVSAFTEYVLQTELPRGWKVPKYTKFAGDTNESTVEHIARYLAESGNLANNENLRMKYFPNSLTKNAFTWFTTLPPNSINSWAQLERIFHEQFYMGQTKISLKELASVKRKNQESIDDYLNRFRLLKSDMSQLADRVRQIERLKAEKVRNSKFQKKKEIGFVDSYDNEIDYEMSDEYLDFDDSDINVAELKPGPPYTCKLLRPSNGKNPIEPKNDKFVTKTYTFDITKCDEIFDLLVTDGQIIVPKDMKIPPIEQRKKRGYCKFHNYLGHKTYQCVVFRDLVQKALNEGRLKYADKAKPPMKVDSDPLPPADATYVEVYDCNMVESLALSREKWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQIGEKPETSTAQETTAQDNVAGDSGMLENKDSVNGSIDSDVIFDVNEFLDFSTEESFEFDWVNKFLELDQIQFIENTERSE* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2618 579 ProSiteProfiles Myb-like domain profile. 458 493 IPR001005 -
Tpr5g2618 579 Pfam Myb-like DNA-binding domain 468 493 IPR001005 -
Tpr5g2618 579 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 467 572 - -
Tpr5g2618 579 MobiDBLite consensus disorder prediction 504 520 - -
Tpr5g2618 579 Gene3D - 455 520 - -
Tpr5g2618 579 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 469 497 IPR017930 -
Tpr5g2618 579 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 467 572 - -
Tpr5g2618 579 CDD SANT 469 493 IPR001005 -
Tpr5g2618 579 MobiDBLite consensus disorder prediction 504 523 - -
Tpr5g2618 579 SUPERFAMILY Homeodomain-like 467 498 IPR009057 -
Tpr5g2618 579 Pfam Retrotransposon gag protein 194 272 IPR005162 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2618 Tpr-Chr5 48377020 48414115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2618 405 506 MYB Transcription Factor Family AT5G16770 35.294 5.00e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr5g2618 Retrotrans_gag 6.5e-10 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2618 - - gsj:114411317 626.706