Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2613 ATGACGCGGCGTTGTTCCCATTGCAGCCACAATGGGCACAACTCAAGAACATGTCCAAACCGTGGTGTTAAGCTATTCGGAGTTCGATTAACCGATGGGATCCGGAAAAGTGCTAGTATGGGTAATCTTAGTCATTATACTGGTTCCGGGTCTGGATCCCTTCATACCGGGTTAAATAACCCGGGTTCTCCTGGTGAAACACCTGATCATGCTGCTGTTGCTGATGGTTATGCTTCTGAGGATTTTGTTCCCGGTTCTTCTTCTGCTTCCCGTGAAAGAAAAAAGGGTACTCCATGGACCGAAGAGGAACATAGAATGTTTTTACTTGGATTGCAGAAGCTGGGCAAAGGTGATTGGCGTGGAATTGCTAGGAACTATGTTATATCAAGGACACCTACTCAAGTGGCCAGTCATGCTCAAAAATATTTCATCAGGCAAAGCAATGTGTCTAGGCGGAAAAGACGGTCCAGCTTGTTTGATATTGTTGCAGATGATGCAGCTGATGCTTCAATGGTACCGCAAGACTTCATGTCAGCTAATCCGCCACAGACTGAAACAGAAGGCAATAACCCTTTGCCTGCTGCTCCCCCGCTCGATGAAGAATGCGAATCAATGGATTCCACAAACTCAAATGATGGAGAGTCTGCCTCTGCCCCATTAATGCCTGATAGCAACACACAAGCGTCGTCTTACCCGCTAGTATATCCGGCATATTTTTCTCCATTCTTCCCATTTCCTCTTCCTTATTGGTCTGGATACAGTCCGGAGCCGGCTCCTAAGAAGGAGACACATGAAGTGGTGAAGCCAACCCCAGTACATTCCAAGAGCCCAATCAATGTCGATGAACTTGTTGGCATGTCAAAACTGAGTTTAGGAGAGACTATTGGTGATGCCGGCCCCTCAACTTTGTCTCGTAAACTACTCGAAGAAGGACCTTCTAGACAGTCGGCATTTCATACAACTCCAGCTTGTGGGACTGTTCTGTGA 987 0.4691 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGIRKSASMGNLSHYTGSGSGSLHTGLNNPGSPGETPDHAAVADGYASEDFVPGSSSASRERKKGTPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADDAADASMVPQDFMSANPPQTETEGNNPLPAAPPLDEECESMDSTNSNDGESASAPLMPDSNTQASSYPLVYPAYFSPFFPFPLPYWSGYSPEPAPKKETHEVVKPTPVHSKSPINVDELVGMSKLSLGETIGDAGPSTLSRKLLEEGPSRQSAFHTTPACGTVL* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2613 328 CDD SANT 98 143 IPR001005 -
Tpr5g2613 328 SUPERFAMILY Homeodomain-like 93 148 IPR009057 -
Tpr5g2613 328 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 94 146 IPR006447 GO:0003677
Tpr5g2613 328 ProSiteProfiles SANT domain profile. 94 147 IPR017884 -
Tpr5g2613 328 PANTHER BNAC01G21010D PROTEIN 1 326 - -
Tpr5g2613 328 MobiDBLite consensus disorder prediction 81 100 - -
Tpr5g2613 328 Gene3D - 97 149 - -
Tpr5g2613 328 ProSiteProfiles Myb-like domain profile. 91 143 IPR001005 -
Tpr5g2613 328 PANTHER TRANSCRIPTION FACTOR KUA1 1 326 - -
Tpr5g2613 328 SMART sant 95 145 IPR001005 -
Tpr5g2613 328 Pfam Myb-like DNA-binding domain 98 143 IPR001005 -
Tpr5g2613 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 147 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2613 Tpr-Chr5 48345453 48349097 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr5g2613 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2613 - - cam:101491712 584.719