Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2610 ATGATTGAACTTACACACCACTCCCTCCCCATTTTCTTCTCCTTTCTTTCTACATTTCTATTTAATCCCTTCTCACACGCTTCCTTCCACTCCCAAACCAATCTCTCTCCCTTCAAAACCAATTTCCCATTCTCCTCTTTTTCATTCCAAAAGAGTGTTTGCTTTGTATCCTATACAATAGAGATTATGATTATGGTTGAAAAAGAAGACTTGGGTTTAAGTCTAAGCTTAAACTTATTTCAAAATACCCCAAAGCAACCTCAACCTCTCAACCTCATATCCTCTTCTCCTTATTTCCATCCTCTAAAACTCTCTTCTCAACAAACTATCACTCCCTCAACAGATCAAAACTCGAAACTTGGAATTGATGTGAATCGATTGCCATGTACCGTTGTTGAATGCGAAGAAGAGGAAGCAGGGGTTTCATCTCCAAACAGTACGGTTTCTAGTGTAAGTGGAAAACGAAGCTTGAGAGAATTAGATCATGACGTGGACAATAGAGGGAATATCAGTGATGAAGAAGACGCTGAAACCGCTAGGAAAAAACTCAGACTCTCTAAAGACCAATCACTTATTCTAGAAGAAACATTCAAAGAACACAATACCCTTAATCCCAAACAAAAGTTAGCACTTGCAAAACAACTTGGCCTTCGTCCAAGACAAGTTGAAGTCTGGTTCCAAAACAGAAGAGCCAGGACAAAGCTAAAGCAAACGGAGGTTGATTGTGAGGTGTTGAAAAGGTGTTGTGAAAATCTAACGGAGGAAAATAGGAGACTACAGAAGGAAGTTCAAGAGCTAAGAGCACTGAAACTTTCCCCTCAATTTTACATGCAAATGACACCACCCACTACTCTTACTATGTGCCCATCTTGTGAACGTGTGGCTGTTCCATCTTCCGGTGTTGGTGTTGATGCATCTAACCGTCACATTTCTATGGCCCAAGCCCATCATCGGGCTTTACCTATAGGCCCGTGGGCTTCTGTAGCTCCCATCACGCATAGGATGTTTGATGTTTTCCGTCAATGA 1026 0.4133 MIELTHHSLPIFFSFLSTFLFNPFSHASFHSQTNLSPFKTNFPFSSFSFQKSVCFVSYTIEIMIMVEKEDLGLSLSLNLFQNTPKQPQPLNLISSSPYFHPLKLSSQQTITPSTDQNSKLGIDVNRLPCTVVECEEEEAGVSSPNSTVSSVSGKRSLRELDHDVDNRGNISDEEDAETARKKLRLSKDQSLILEETFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSGVGVDASNRHISMAQAHHRALPIGPWASVAPITHRMFDVFRQ* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2610 341 SMART halz 236 279 IPR003106 GO:0006355|GO:0043565
Tpr5g2610 341 Gene3D - 184 234 - -
Tpr5g2610 341 CDD bZIP 229 268 - -
Tpr5g2610 341 CDD homeodomain 180 237 IPR001356 GO:0003677
Tpr5g2610 341 ProSiteProfiles 'Homeobox' domain profile. 176 236 IPR001356 GO:0003677
Tpr5g2610 341 Pfam Homeobox associated leucine zipper 236 270 IPR003106 GO:0006355|GO:0043565
Tpr5g2610 341 Coils Coil 235 272 - -
Tpr5g2610 341 Pfam HD-ZIP protein N terminus 65 159 IPR006712 GO:0005634
Tpr5g2610 341 ProSitePatterns 'Homeobox' domain signature. 211 234 IPR017970 GO:0000981|GO:0006355
Tpr5g2610 341 PANTHER - 68 333 - -
Tpr5g2610 341 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 68 333 - -
Tpr5g2610 341 Pfam Homeodomain 180 234 IPR001356 GO:0003677
Tpr5g2610 341 PRINTS Lambda-repressor HTH signature 207 216 IPR000047 GO:0003677
Tpr5g2610 341 PRINTS Lambda-repressor HTH signature 216 232 IPR000047 GO:0003677
Tpr5g2610 341 SUPERFAMILY Homeodomain-like 172 237 IPR009057 -
Tpr5g2610 341 SMART HOX_1 178 240 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2610 Tpr-Chr5 48288407 48290633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2610 64 340 Homeobox Transcription Factor Family AT4G16780 59.797 6.26e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr5g2610 HD-ZIP_N 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2610 K09338 - gmx:100813367 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5653 2 65468888 65470721 Tpr5g2610 5 48288407 48290633 PCT
Tpr2g5535 2 64129140 64131295 Tpr5g2610 5 48288407 48290633 PCT