Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2605 ATGGCTAACTATGATGAAGAAGTTTCAGCTCTTAAAAGAATCAAATTACATCTTTTAGGTGAATTTTCTCCACTTCCATCTCCTATTTCACAACCTTCCTTTGACTTTGATTTTGATTTTGATTTTGATTTTCAATTTCAAACTAACTCAACCACTTTGGATTCTTCAATTTCTTTGGATCATTATTCAACCGATCTCTTCCAATTTGATTACAAACCTCAACCAATTCAACCTCAGAGCCCTAAATTCCTAACATCACATCCTCAACAAACTGTAGAGAAGAAGAAGCAGAAAGTGAATCGTAAACCATCGCTGGAAATAGCTCTCCCGAATAAAACAACCGAATGGATCCAATTCGGAAGCCAAAATCCGAAACCGGAGGTGGTTGTACAGAAACCTGAAGCTGCCGAGAAACAGCACTACAGAGGAGTTAGAAGAAGACCGTGGGGAAAATTCGCCGCTGAGATCCGTGACCCGAACAAACGCGGGTCAAGGGTTTGGCTTGGAACGTTTGAAACAGCTATTGAAGCTGCTAAAGCCTATGACAGTGCTGCTTTCAGGATGCGTGGATCTAAAGCGATTCTCAATTTTCCACTTGAAGTCAACGAGGCGGCAACGGCGGCAACGGCGGCGGCGGAGACCTCCGGCGACGGTGAGAGAAAACGGTGCCGTGAAGAGGAAGAGGTAGTAGAAGTGAAACCGGTTGTGAAAAAGGAGAAAATAACAGAATTTGATGTGAACTGTTTTAAAGAGATGCCGTTAACGCCGTCAGCTTTAACTGGGTTTTGGGATAATAATGATGTTAAGGGGATGTTTAACTTTCCACCGTTGTCGCCGTTATCTTCTTTTTGCTTGTCGCCTCTAGTCCTTGTTTGA 876 0.4304 MANYDEEVSALKRIKLHLLGEFSPLPSPISQPSFDFDFDFDFDFQFQTNSTTLDSSISLDHYSTDLFQFDYKPQPIQPQSPKFLTSHPQQTVEKKKQKVNRKPSLEIALPNKTTEWIQFGSQNPKPEVVVQKPEAAEKQHYRGVRRRPWGKFAAEIRDPNKRGSRVWLGTFETAIEAAKAYDSAAFRMRGSKAILNFPLEVNEAATAATAAAETSGDGERKRCREEEEVVEVKPVVKKEKITEFDVNCFKEMPLTPSALTGFWDNNDVKGMFNFPPLSPLSSFCLSPLVLV* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2605 291 SUPERFAMILY DNA-binding domain 140 200 IPR016177 GO:0003677
Tpr5g2605 291 Pfam AP2 domain 140 190 IPR001471 GO:0003700|GO:0006355
Tpr5g2605 291 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 278 - -
Tpr5g2605 291 SMART rav1_2 140 204 IPR001471 GO:0003700|GO:0006355
Tpr5g2605 291 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 5 278 - -
Tpr5g2605 291 Gene3D AP2/ERF domain 139 201 IPR036955 GO:0003700|GO:0006355
Tpr5g2605 291 ProSiteProfiles AP2/ERF domain profile. 140 198 IPR001471 GO:0003700|GO:0006355
Tpr5g2605 291 CDD AP2 139 198 IPR001471 GO:0003700|GO:0006355
Tpr5g2605 291 PRINTS Ethylene responsive element binding protein signature 141 152 IPR001471 GO:0003700|GO:0006355
Tpr5g2605 291 PRINTS Ethylene responsive element binding protein signature 180 200 IPR001471 GO:0003700|GO:0006355
Tpr5g2605 291 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2605 Tpr-Chr5 48231682 48232842 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2605 36 291 AP2-EREBP Transcription Factor Family AT5G47230 48.077 8.52e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr5g2605 AP2 3.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2605 K09286 - gmx:100816039 288.5