Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2604 ATGGCTAACTATGATGAAGAAGTTTCAGCTCTTAAAAGAATCAAATTACACCTTCTAGGTGAATTTTCTCCACTTCCATCTCCTATTTCACAACCTTCCTTTGACTTTGATTTTGATTTTGATTTTGATTTTGATTTTGATTTTCAATTTCAAACTAACTCAACCACTTTGGATTCTTCAATTTCTTTGGATCATTATTCAACCGATCTCTTCCAATTTGATTACAAACCTCAAATAATTGAACCTCAGAGTCCCAAATTCCTAACATCTCATCCTCAACAAACCGTAGAGAAGAAGAAGCCCAAATTGAATCGTAAACCGTCGCTGGAAATCGCTCTCCCGAATAAAACAACCGAATGGATCCAATTCGGGAACCAAAATCCGAAACAAGAGGTGGTTGTTCAGAAACAGGAAGCTGCTGAGAAACAGCACTACAGAGGAGTTAGAAGAAGACCGTGGGGAAAGTTCGCCGCTGAGATCCGTGACCCGAACAAACGCGGGTCAAGGGTTTGGCTTGGAACGTTTGAAACAGCTATTGAAGCTGCTAAAGCCTACGACAGTGCTGCTTTCAGGATGCGCGGATCTAAAGCGATTCTCAATTTTCCACTAGAAGTCAACGAGTCGGCAACGGCGGTGGCGGAGACCTCCGGCGACGGTGACAGAAAACGGTGCCGTGAAGAGGAAGAGGTAGTAGAAATGAAACCGGTGGTAAAAAAAGAGAAAATAACGGAATTTGATGTGAACTGTTTTAAAGAGATGCCGCCGTCAGCTTTCACCGGATTTTGTTTGTCGCCGTTATCTTTCTTTTGTTTGTCACCTCTAGTTGCCGTATGA 834 0.4257 MANYDEEVSALKRIKLHLLGEFSPLPSPISQPSFDFDFDFDFDFDFDFQFQTNSTTLDSSISLDHYSTDLFQFDYKPQIIEPQSPKFLTSHPQQTVEKKKPKLNRKPSLEIALPNKTTEWIQFGNQNPKQEVVVQKQEAAEKQHYRGVRRRPWGKFAAEIRDPNKRGSRVWLGTFETAIEAAKAYDSAAFRMRGSKAILNFPLEVNESATAVAETSGDGDRKRCREEEEVVEMKPVVKKEKITEFDVNCFKEMPPSAFTGFCLSPLSFFCLSPLVAV* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2604 277 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 5 261 - -
Tpr5g2604 277 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 261 - -
Tpr5g2604 277 Gene3D AP2/ERF domain 143 204 IPR036955 GO:0003700|GO:0006355
Tpr5g2604 277 Pfam AP2 domain 144 194 IPR001471 GO:0003700|GO:0006355
Tpr5g2604 277 PRINTS Ethylene responsive element binding protein signature 145 156 IPR001471 GO:0003700|GO:0006355
Tpr5g2604 277 PRINTS Ethylene responsive element binding protein signature 184 204 IPR001471 GO:0003700|GO:0006355
Tpr5g2604 277 SMART rav1_2 144 208 IPR001471 GO:0003700|GO:0006355
Tpr5g2604 277 SUPERFAMILY DNA-binding domain 144 204 IPR016177 GO:0003677
Tpr5g2604 277 CDD AP2 143 202 IPR001471 GO:0003700|GO:0006355
Tpr5g2604 277 ProSiteProfiles AP2/ERF domain profile. 144 202 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2604 Tpr-Chr5 48227145 48228172 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2604 7 207 AP2-EREBP Transcription Factor Family AT4G17490 52.451 1.48e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr5g2604 AP2 2.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2604 K09286 - gmx:100816039 274.633