Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2603 ATGGCTAATTATGAAGAAGTTTCAGCTCTTAAAAGAATTAAGTTACATCTTCTAGGTGAATTTTCTCCACTTCCATCTCCTATTTCACAACCCTCCTTAAATTTTGATTTTGATTTTGATTTTCAATTTCAAACGGAACAAATTCAATCTCAATCCGAATCGGAATCAAAATCCATCAATTCCGATTCTTCGATTTCTTTGGATCATTACTTAACTGATCTCTTTCAAACAGAAACACAATTTCCCGTCTTTGAATTTGATTCAAAACCTCAATTAATTGAAACTGAGAGTCCACAACCCTTAATTTCTCAAAGAACCGTAGAGAAAAAGCCTCAACTGAATAGAAAACCGTCGCTGAAAGTTGATTTACCGAAGAAAACAACCGAATGGATCCAATTCGGGAAACCCGAACCGAAACCGGAGGTGATTGTGAAGGCGGAAGTTGTTGAGAAACAACACTACAGAGGAGTTAGACAAAGACCGTGGGGAAAGTTCGCGGCCGAAATCCGTGACCCGAATAAACGCGGGTCAAGGGTTTGGCTTGGAACGTTTGAAACGGCTATTGAAGCTGCTAAAGCTTATGATCGTGCTGCTTTTAAGCTGCGTGGATCTAAAGCGATTCTTAATTTTCCTCTTGAAGTCAACGCGGCGGTGATGGCGGAGACGGAGACTTCCGGTGACAAAAAACGGTGCCGTGAAGAGGAAGAGGTAGTAGAAGTGAAACCGGTGGTGAAAAAAGAAAAAATAACGGAATTTGATGTGAACTATTTTAAAGAGATGCCGCTAACGCCGTCAGCTTTCACTGGGTTTTGGGATAATAATGATGTTAAGGGGATGTTCAACTTTCCACCTTTGTCACCGTTATCTTCCTTTTGTTTGTCACCTCTTGTGGTTGTTTGA 900 0.4067 MANYEEVSALKRIKLHLLGEFSPLPSPISQPSLNFDFDFDFQFQTEQIQSQSESESKSINSDSSISLDHYLTDLFQTETQFPVFEFDSKPQLIETESPQPLISQRTVEKKPQLNRKPSLKVDLPKKTTEWIQFGKPEPKPEVIVKAEVVEKQHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFETAIEAAKAYDRAAFKLRGSKAILNFPLEVNAAVMAETETSGDKKRCREEEEVVEVKPVVKKEKITEFDVNYFKEMPLTPSAFTGFWDNNDVKGMFNFPPLSPLSSFCLSPLVVV* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2603 299 ProSiteProfiles AP2/ERF domain profile. 153 211 IPR001471 GO:0003700|GO:0006355
Tpr5g2603 299 CDD AP2 152 211 IPR001471 GO:0003700|GO:0006355
Tpr5g2603 299 Gene3D AP2/ERF domain 152 213 IPR036955 GO:0003700|GO:0006355
Tpr5g2603 299 SMART rav1_2 153 217 IPR001471 GO:0003700|GO:0006355
Tpr5g2603 299 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 286 - -
Tpr5g2603 299 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 5 286 - -
Tpr5g2603 299 SUPERFAMILY DNA-binding domain 153 213 IPR016177 GO:0003677
Tpr5g2603 299 Pfam AP2 domain 153 203 IPR001471 GO:0003700|GO:0006355
Tpr5g2603 299 PRINTS Ethylene responsive element binding protein signature 154 165 IPR001471 GO:0003700|GO:0006355
Tpr5g2603 299 PRINTS Ethylene responsive element binding protein signature 193 213 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2603 Tpr-Chr5 48221729 48223183 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2603 1 299 AP2-EREBP Transcription Factor Family AT5G47230 44.969 2.65e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr5g2603 AP2 1.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2603 K09286 - gmx:100800453 295.819