Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2602 ATGTACGGAAACAATAATTTTGATTCCGATTTTGCCCTTTTAGACTCTATTCGCCGCCACTTGTTAGGTGAATCCGAATCAATATTCGGAGCTCCAATAACTTCTTCGGGTAATACCCGGGTTTTCTCTCGGAGCTCCAGTTTCAGTAGTTTATACCCATGTTTGAGTGAAAATTGGGGTGAATTGCCTCTCAAGGAAGATGATTCAGAAGATATGGTGCTTTACGGCGTTCTCCGTGACGCTGTAAATGTTGGGTGGGTTCCTTCTCTTCAAGTCGGGTCACCCGAAAGTATCTCATCGGGTTTTCCGTTAGAATTAACGGTTAAACCGGAACCGGATGTTATGCCGGTTAAAATTATTCCAAAGGTGGAATCTACGACGGTGCAAGTGGTTCCGGAAGTGCTAAAAGCTGCTCCGGTGAAAGGAAAACACTTCCGCGGCGTTAGACAACGGCCGTGGGGAAAATTTGCGGCGGAGATTCGTGATCCGGCGAAGAACGGAGCTAGAGTTTGGCTCGGAACATTTGAAACCGCTGAAGATGCAGCGTTGGCTTATGATAGAGCTGCTTATAGGATGAGAGGTTCAAGAGCTTTGTTGAATTTTCCACTTCGGGTTAACTCCGGTGAACCCGACCCGGTTAGGATTACTTCAAAACGGGGTTCGCCGGAACGTTCTTCTTCATCTTCGTCATCGGAAAGTAATTCTCCGGCGAAGAGGAAAAAAGTGATGACAAGTCAGAGTGGATTAAAAACAGGACAAGTGGGAAATCAAGTGGAACAATGTACACGTGGAGGACAGTTATTGGTTACTTAA 813 0.46 MYGNNNFDSDFALLDSIRRHLLGESESIFGAPITSSGNTRVFSRSSSFSSLYPCLSENWGELPLKEDDSEDMVLYGVLRDAVNVGWVPSLQVGSPESISSGFPLELTVKPEPDVMPVKIIPKVESTTVQVVPEVLKAAPVKGKHFRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRITSKRGSPERSSSSSSSESNSPAKRKKVMTSQSGLKTGQVGNQVEQCTRGGQLLVT* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2602 270 SUPERFAMILY DNA-binding domain 144 204 IPR016177 GO:0003677
Tpr5g2602 270 PRINTS Ethylene responsive element binding protein signature 145 156 IPR001471 GO:0003700|GO:0006355
Tpr5g2602 270 PRINTS Ethylene responsive element binding protein signature 168 184 IPR001471 GO:0003700|GO:0006355
Tpr5g2602 270 ProSiteProfiles AP2/ERF domain profile. 144 202 IPR001471 GO:0003700|GO:0006355
Tpr5g2602 270 Pfam AP2 domain 144 194 IPR001471 GO:0003700|GO:0006355
Tpr5g2602 270 PANTHER DNA-BINDING DOMAIN 31 246 IPR044808 GO:0003700|GO:0009873
Tpr5g2602 270 MobiDBLite consensus disorder prediction 219 257 - -
Tpr5g2602 270 MobiDBLite consensus disorder prediction 210 257 - -
Tpr5g2602 270 Gene3D AP2/ERF domain 143 205 IPR036955 GO:0003700|GO:0006355
Tpr5g2602 270 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 31 246 - -
Tpr5g2602 270 SMART rav1_2 144 208 IPR001471 GO:0003700|GO:0006355
Tpr5g2602 270 CDD AP2 143 202 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2602 Tpr-Chr5 48200250 48201597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2602 9 269 AP2-EREBP Transcription Factor Family AT4G17500 54.417 2.73e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr5g2602 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2602 K09286 - gmx:100803653 332.028