Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2586 ATGGGGAAACAAGGTCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCAATTTTGTGCAATGCATGTGGATCTCGATGGAGAACAAAGGGAACACTTGCAAATTATACTCCTTTACATGCTCGGACAGATACTGTTGATTATGACGATCAAAGAGTTTCCAGGTTAAAGATTGTATCATTAAATAAGAACAAAGAAGTGAAATTGGTCAAACGAAAGAAGAACTATGATAATGCTTATACTGCATCTGGAGAGTTCACGCCTGAATATAATCAAGGATTCCTAAAGGCTGTGGATGAGGATACGAGCAATAGATCAAGTTCAGGGTCAGCCATCTCTAATTCAGAAAGCTGTGTTCAATTTTGTGGCACCGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATACTGCGGTGCCTTCAAAGAAGAGGACATGTGGAGGTCGTCTGAAGCATTCTTCTGTTGAGAAGCTCACAAAAGACTTGTGTACTATTCTTCATGAACAACAACAGTCTTGTTTTTCTGCTTCTTCTGAAGAGGAACTTCTTTTTGAAAGTGAAACGCCGATGGTCTCTGTTGAGATAGGACATGGAAGCATGCTTATTAGGCATCCTAGCTCTATAGCTCGTGACGAAGAGTCTGAGACTAGCTCTCTTTCAGTTGATAATAAACAATGCCTAATGAATGAGGCATATTCGTTCTATGGTTCAATTCCCATGCTCAGTGATTATACTGGCATGAATTTCTCTTCTCAGGGAGTTGCAAAGGTCAGAAACTCTGCTGGCCAAAGAATACAACAGGAGCAACTTGAGAGGGAGAAGTCTCGGCTTGAAAAAATAGAAGTTCTTGGAAATCATGATTCACCCCTATGTATAATAGATTTAAATGATGTAGTCAACTATGAGGAGTTTTCAAGAAACTTGACAAATGAAGAGCAGCAGCAATTACTGAAATATCTCCCTGTGGTTGATACTGCTAAACTTCCTGATAGCCTTAAAATTATGTTCAATAGCTTTCAATTCAAGGAGGATTTAACCTATTTTCAGAAACTTCTCGGGGAAGGTGTCCTCGATATCTCTTTGTTGGGGGCAAACCCTGAAGACTGCAAGACGTTGAAAAGGCTTGCATTGTCTAATCTGTCAAAGTCAAAATGGAAAGGCGGCATCAAAACTGAAAAATATGATGATATGGAATCTCCTGTTGTAGCATCAAGTAATACTGCGAATGCGAAGAGATTGCGTGTCAGCCAAAATCAAAATTTTCCAGAATTGAAGACAACAATGAGGAGTCCCAAAAGGGTGATCGTAAAAGCTGGCTGTGGCGGCAAAGAAGTTGTAGATGGCTCTAGCATCAGTCCGGAAAGCCTATTTGCATTGCCTCACAATGGTGGCTTGCACATGCTGGATTCTTCAAACTTTTTTGACGAGAGTTCTGATCAGGATCTGCTGCTAGAGTTTCCATCTAACAATTCTTTTCCACAGGCAGAGCTCCTGCTCCCAAATTCTAGCTTGGTAGCTCAAGGCAGCACCAGTAGTAGCTCGGTATATTCTCATGTCACTCGTCCTTGA 1605 0.4174 MGKQGPCYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARTDTVDYDDQRVSRLKIVSLNKNKEVKLVKRKKNYDNAYTASGEFTPEYNQGFLKAVDEDTSNRSSSGSAISNSESCVQFCGTDASDLTGPAQSVVWDTAVPSKKRTCGGRLKHSSVEKLTKDLCTILHEQQQSCFSASSEEELLFESETPMVSVEIGHGSMLIRHPSSIARDEESETSSLSVDNKQCLMNEAYSFYGSIPMLSDYTGMNFSSQGVAKVRNSAGQRIQQEQLEREKSRLEKIEVLGNHDSPLCIIDLNDVVNYEEFSRNLTNEEQQQLLKYLPVVDTAKLPDSLKIMFNSFQFKEDLTYFQKLLGEGVLDISLLGANPEDCKTLKRLALSNLSKSKWKGGIKTEKYDDMESPVVASSNTANAKRLRVSQNQNFPELKTTMRSPKRVIVKAGCGGKEVVDGSSISPESLFALPHNGGLHMLDSSNFFDESSDQDLLLEFPSNNSFPQAELLLPNSSLVAQGSTSSSSVYSHVTRP* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2586 534 Gene3D - 289 395 IPR038108 -
Tpr5g2586 534 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
Tpr5g2586 534 Pfam Asx homology domain 286 370 IPR028020 -
Tpr5g2586 534 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Tpr5g2586 534 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Tpr5g2586 534 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 534 - -
Tpr5g2586 534 PANTHER OSJNBB0038F03.10 PROTEIN 1 534 IPR044589 -
Tpr5g2586 534 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Tpr5g2586 534 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 298 411 IPR044867 -
Tpr5g2586 534 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Tpr5g2586 534 Gene3D - 3 86 IPR013088 GO:0006355|GO:0008270
Tpr5g2586 534 CDD ZnF_GATA 6 52 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2586 Tpr-Chr5 47864691 47870663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2586 1 510 C2C2-Gata Transcription Factor Family AT4G17570 50.851 7.00e-145 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr5g2586 ASXH 1.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2586 - - gmx:100799745 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5558 2 64319520 64324310 Tpr5g2586 5 47864691 47870663 PCT