Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2585 ATGGATCTTAGTTTTAAGCATCAATTTAGCCTTGTTTGTGTTATTCTGTTGTTTCCAGCACTATGTAGCTGCAAAGAATATTATGCCAAATCCAGAGCTTCCTATTATGGCACCTCTGATGGCTATGGAAATTCAAGGGGAGCTTGTGGTTTTGGATACTATGGAAAAATAGTGAATGATGGCAGTGTCACAGCTGTGTCTGCAAAGCTGTGGAAAAATGGAGGAGGCTGTGGTGCATGCTATCAAGTAAAGTGCAAAATACCACAATTATGTGATTACAATGGAACATATGTTGTGGTAACTGACTATGGTGAGGGAGATAGAACTGATTTCATAACGAGTCCACGCGCCTTCTCAAAATTAGGACGCAACGCAGTTGCATCTGAAAAATTGAAGAAATATGGAGTATTGGATGTTGAATACAAAAGAGTTCCTTGTACATTTAAAGGCAACAATATTGTGTACCAAATCAATGAAAATAGTAGAAATCCTGGCTACTTTGCTATCAATGTTCTTTATGTTGGAGGAACTTATGATGTCACTACTGTTGAAATATGGCAGAGAGAACAACACCAATGGGTGGCGATGCGTAGATCTTATGGGGCAGTATTTGACTTTACTAACCCACCAGAAGGTGAAATCAGATTAAGATTTCAAGTGAGTAGCAATATTGAAGCTCATTATTATGTGGTGTCAAGGTTCCCAATTCCTGCAGTTTGGAAGGCTGGTGCTACTTATTCCACTAAGATTCTGCCTTATTAA 762 0.3885 MDLSFKHQFSLVCVILLFPALCSCKEYYAKSRASYYGTSDGYGNSRGACGFGYYGKIVNDGSVTAVSAKLWKNGGGCGACYQVKCKIPQLCDYNGTYVVVTDYGEGDRTDFITSPRAFSKLGRNAVASEKLKKYGVLDVEYKRVPCTFKGNNIVYQINENSRNPGYFAINVLYVGGTYDVTTVEIWQREQHQWVAMRRSYGAVFDFTNPPEGEIRLRFQVSSNIEAHYYVVSRFPIPAVWKAGATYSTKILPY* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2585 253 SUPERFAMILY Barwin-like endoglucanases 15 151 IPR036908 -
Tpr5g2585 253 SUPERFAMILY PHL pollen allergen 152 247 IPR036749 -
Tpr5g2585 253 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Tpr5g2585 253 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Tpr5g2585 253 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Tpr5g2585 253 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Tpr5g2585 253 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Tpr5g2585 253 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Tpr5g2585 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 151 IPR007112 -
Tpr5g2585 253 PANTHER EXPANSIN-B3 4 250 - -
Tpr5g2585 253 SMART dpbb_1 63 141 IPR007112 -
Tpr5g2585 253 Pfam Expansin C-terminal domain 155 223 IPR007117 -
Tpr5g2585 253 Gene3D - 147 249 IPR036749 -
Tpr5g2585 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 248 IPR007117 -
Tpr5g2585 253 Pfam Lytic transglycolase 64 141 IPR009009 -
Tpr5g2585 253 Gene3D - 21 146 IPR036908 -
Tpr5g2585 253 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 250 - -
Tpr5g2585 253 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2585 Tpr-Chr5 47860210 47861562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2585 5 251 Expansin Gene Family AT4G17030 49.802 7.76e-83 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2585 - - gmx:100779487 345.895