Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2569 ATGAAACTCACTTTTAAGCACCAACTTGGCCTTGTTTGTGTCATATTGCTCTTACCTTACCTATGTAACTCACAAGACTCTTTTACTGACTCCAGAGCAACATATTATGGTAGTCCTGATTGCTATGGGACTCCAAGGGGAGCTTGTGGCTTTGGAGAATATGGAAGGACAGTGAATGATGGCAGTGTAGCAGGTGTGTCTAAGCTATGGAAGAATGGTAGTGGCTGTGGTGCATGCTATCAGGTGAGGTGCAAAATACCACAATACTGTGATGAAAATGGAGCAACTGTGGTGGTAACCGACTATGGTGAAGGAGACAGAACAGACTTTATAATGAGTTCTCGTGGTTACTCGAGATTGGGGCGCAATGCAGATGCATCTGCAGAGCTATTCAAATATGGTGTAGTAGATATTGAATACAAAAGAGTTCCATGTATGTATAGTGGCTATAACATTGTGGCTCAAGTCGATGAACGCAGCAAAAACCCTGATTACTTTGCTGTTGTGGTTCTCTATGTAAATGGAATGTATGATGTCAATGCTGTTGAGATGTGGCAGGAAGATTGCCAAGAATGGAGGCCTTTGAGGAGAGCCTATGGAGTAGTGTTTGACTCAGCCAATCCACCAAGTGGTGAAATATACTTGAGGTTCCAAGTGAGTGGAATTAATGCAGGTGTCTATTGGGTGCAGTCCAAGAATGCTATTCCTAGTGATTGGAAAGCTGGAGCAGCATATGACACTATGGTTCAGCTTAATTAG 759 0.4295 MKLTFKHQLGLVCVILLLPYLCNSQDSFTDSRATYYGSPDCYGTPRGACGFGEYGRTVNDGSVAGVSKLWKNGSGCGACYQVRCKIPQYCDENGATVVVTDYGEGDRTDFIMSSRGYSRLGRNADASAELFKYGVVDIEYKRVPCMYSGYNIVAQVDERSKNPDYFAVVVLYVNGMYDVNAVEMWQEDCQEWRPLRRAYGVVFDSANPPSGEIYLRFQVSGINAGVYWVQSKNAIPSDWKAGAAYDTMVQLN* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2569 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Tpr5g2569 252 Pfam Expansin C-terminal domain 155 236 IPR007117 -
Tpr5g2569 252 SUPERFAMILY Barwin-like endoglucanases 13 149 IPR036908 -
Tpr5g2569 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 247 IPR007117 -
Tpr5g2569 252 Gene3D - 145 248 IPR036749 -
Tpr5g2569 252 Pfam Lytic transglycolase 63 140 IPR009009 -
Tpr5g2569 252 Gene3D - 20 144 IPR036908 -
Tpr5g2569 252 SUPERFAMILY PHL pollen allergen 155 246 IPR036749 -
Tpr5g2569 252 PANTHER EXPANSIN-B3 4 252 - -
Tpr5g2569 252 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Tpr5g2569 252 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Tpr5g2569 252 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Tpr5g2569 252 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Tpr5g2569 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Tpr5g2569 252 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2569 Tpr-Chr5 47701156 47703861 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2569 1 251 Expansin Gene Family AT4G17030 57.143 9.40e-105 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2569 - - gmx:100779487 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5561 2 64335614 64337931 Tpr5g2569 5 47701156 47703861 PCT