Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2568 ATGGTTCTTAGTTTTAAGCACCAATTTAGTCTTGTTTGTGTCATACTGTTATTTCCAGCGCTATGTAACTGCAAAGAATATTATACCAAATCCAGAGCTTCCTATTATGGCACATCTGATGGTTATGGAAATTCAAGGGGAGCCTGTGGTTTTGGAGACTATGGAAAAACAGTGAATGATGGCAGTGTCACAGCTGTGTCTGCAAAGCTGTGGAAGAATGGAGAAGGCTGTGGTGCATGCTATCAAGTGAGGTGCAAAATACCACAATTCTGTGATGACAATGGAGCATATGTTGTGGTAACTGATTATGGTGAGGGAGATAGAACTGATTTCATAACGAGTCCACGCGCCTTCTCAAATTTAGGACGTGACGCAATTGCATCTGAAAAATTGAAGAAATATGGAGTATTGGATGTTGAATACAAAAGAGTTCCATGTACATTTAAAGGCAACAATATAGTATACAAAATCAATGAAAATAGTAATAATCCTGGCTACTTTGCTATTAATATTCTTTATGTTGGAGGAACTTATGATGTCACTACTGTTGAAATATGGCAGAGAGAACAACACCAATGGGTGGCGATGCGTAGATCTTATGGGGCAGTATTTGACTTTGCTAACCCACCAGAAGGTGAAATCAGATTGAGATTCCAATTGAGTAGAAATATTGAAGCTCATCATCATGTAGTATCAAGATTTGCAATTCCTGCAGCTTGGAAGGCTGGTGCTACATATTCCACCAAGATTTAA 753 0.3865 MVLSFKHQFSLVCVILLFPALCNCKEYYTKSRASYYGTSDGYGNSRGACGFGDYGKTVNDGSVTAVSAKLWKNGEGCGACYQVRCKIPQFCDDNGAYVVVTDYGEGDRTDFITSPRAFSNLGRDAIASEKLKKYGVLDVEYKRVPCTFKGNNIVYKINENSNNPGYFAINILYVGGTYDVTTVEIWQREQHQWVAMRRSYGAVFDFANPPEGEIRLRFQLSRNIEAHHHVVSRFAIPAAWKAGATYSTKI* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2568 250 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Tpr5g2568 250 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Tpr5g2568 250 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Tpr5g2568 250 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Tpr5g2568 250 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Tpr5g2568 250 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Tpr5g2568 250 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 250 - -
Tpr5g2568 250 SMART dpbb_1 63 141 IPR007112 -
Tpr5g2568 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 151 IPR007112 -
Tpr5g2568 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 248 IPR007117 -
Tpr5g2568 250 SUPERFAMILY Barwin-like endoglucanases 15 151 IPR036908 -
Tpr5g2568 250 Gene3D - 147 249 IPR036749 -
Tpr5g2568 250 PANTHER EXPANSIN-B3 4 250 - -
Tpr5g2568 250 Gene3D - 21 146 IPR036908 -
Tpr5g2568 250 SUPERFAMILY PHL pollen allergen 152 247 IPR036749 -
Tpr5g2568 250 Pfam Lytic transglycolase 64 141 IPR009009 -
Tpr5g2568 250 Pfam Expansin C-terminal domain 154 237 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2568 Tpr-Chr5 47698756 47700062 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2568 5 250 Expansin Gene Family AT4G17030 50.000 1.18e-84 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2568 - - gmx:100779487 348.206