Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2548 ATGGCTGTACCAAAAGTGAATGAAAAATTGCTTGAAGACCTTCAAGTAATGGGATTTCCACATGCAAGGGCAACAAGATCACTCTATTTTTCTGGCAATAGAAGCTTAGAGGATGCTATAACTTGGATGGTTGATCATGAGAATGACACTGATATTGATGAGATTCCATTGGTAGATGTAGACATTGATATTGATACTTCTCCATCATTCCCTATCACAGAAGAAATGAGAAGGAAAGCAGTGGCCTTAATTGCTAACAATTTAAGGGACCAAGAGAAGAACAAGAAAAAGTATGAAGAAAAAATAATGGAAAGAGAAAGGGAAAAGGAGAGGATTCAAGCAGGTAAGAAACTCCTTGAGGCGAAACGAATCGCGGAAGAAAATGAAAGAAAACGGAATTTAGCATTAAGAAAAGCAGAAAAAGAAGAAGAGCAAAGAGCTAGGGATAACATTCTCAAGAAACTAGAGCAAGATAAGTTAAATAGAAGGTCTGAACTTGGATTACCTTTAGAAAGCCAAGCAAATGTGAGATCATCACCAGCCATTGTAGTAAAGCAAGAAAAGATATCAAAGCCTGTTTATACAACCACAAAAATTGAACACTTGAGAGAATGTTTGAGGTCTCTCAAGCGTGAACACAAGGGTGAGAATACAAGAATCAGAAGGGCCTTTGAAACACTTCTAGTGTATGTTGGAAATGTTGTCAAGAATCCTAAGGAGGAAAAATACAGAAAGATTCGACTGAGTAATCCATTATTCCATGATAGAGTTGGAAGTTTAAATGGAGGTGTAGAATTTCTTGAGCTATGTGGTTTTGAGAGAGCTGATGAGTTCTTGCATCTTCCAAGTGAAAAGATTGACATGGAACTACTAAGTTCAGCTGGTTTTGTCTTAAATTCTGCAATGACAAATCCTTTCTTTGGACTTTTAAGTACTTAA 939 0.3674 MAVPKVNEKLLEDLQVMGFPHARATRSLYFSGNRSLEDAITWMVDHENDTDIDEIPLVDVDIDIDTSPSFPITEEMRRKAVALIANNLRDQEKNKKKYEEKIMEREREKERIQAGKKLLEAKRIAEENERKRNLALRKAEKEEEQRARDNILKKLEQDKLNRRSELGLPLESQANVRSSPAIVVKQEKISKPVYTTTKIEHLRECLRSLKREHKGENTRIRRAFETLLVYVGNVVKNPKEEKYRKIRLSNPLFHDRVGSLNGGVEFLELCGFERADEFLHLPSEKIDMELLSSAGFVLNSAMTNPFFGLLST* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2548 312 Pfam PUB domain 220 287 IPR018997 -
Tpr5g2548 312 Gene3D - 203 300 - -
Tpr5g2548 312 SUPERFAMILY PUG domain-like 194 306 IPR036339 -
Tpr5g2548 312 Coils Coil 81 115 - -
Tpr5g2548 312 PANTHER PUB DOMAIN-CONTAINING PROTEIN-RELATED 1 312 - -
Tpr5g2548 312 Coils Coil 124 161 - -
Tpr5g2548 312 PANTHER F13M7.16 PROTEIN 1 312 - -
Tpr5g2548 312 Gene3D - 8 53 - -
Tpr5g2548 312 SUPERFAMILY UBA-like 5 56 IPR009060 GO:0005515
Tpr5g2548 312 Pfam UBA/TS-N domain 7 42 IPR015940 -
Tpr5g2548 312 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Tpr5g2548 312 SMART PGNneu 222 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2548 Tpr-Chr5 47467177 47471550 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2548 1 310 C2H2 Transcription Factor Family AT1G04850 55.272 1.71e-94 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2548 K24348 - gmx:100781260 443.736