Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2542 ATGGCTTTCCTAAGTCATAACATAAATCACTTGTTGATTACTTTCATCATATTTTGCAGCTTTTGTTCATGTTATAGTTCCATCAATGACACCATTACTTTATCAAAATCACTCAAAGACCAAGATACAATAACCTCAAACAGCACAAACTTCAAGTTAGGATTTTTTAGCCCAATAAACTCAACAAACCGTTACCTAGGAATTTGGTACATCAATGAAACAAACAACATATGGATTGCAAACAGAGACCAACCTCTTAAAGATTCAAATGGAATTGTCTCAATTCACAAAGATGGTAATCTTGTAATCTTGAACAAACAAAAGGGTGACATCATTTGGTCAACAAACATTTCAACTTCAACAAATTCAACAGCTCAACTTGATGATTCAGGAAACTTGATTCTAAGAGACATCAATTCAGGAGAAACAATTTGGGATAGTTTCTCACACCCTGCAGATGCAGCTGTTCCAACCATGAGAATTGGTGCTAACAAAATAACCGGTAAGAAAATAACTTTTGTATCAAGAAAGAGTGAAAATGATCCTTCTTCAGGACATTTTTCGGCTAGTCTTGAAAGATTGGATGCACCAGAAGTTTTTATTTGGCATGATAAAAATATTCATTGGAGAACTGGTCCATGGAATGGAAGAGTTTTTCTCGGATCGCCAAGAATGTTAACCGAGTATTTATTCGGTTGGCGTTTAGATCATGACGGTGATGGAACGGATTATATAACTTACAATTTCGCCGACAAAACTAAGTTTGGAATTCTCACATTGACATACCATGGAACACTTAAGTTGGTTGAGTATATTAATAAAACAAAGTTTCTTAGTCTTGAGGTTGATCAAAATGAGTGTGATTTTTATGGAAAATGTGGGCCATTTGGTAATTGTGATAATTCTAGTGTACCAATTTGTAGTTGTTTTGAAGGGTTTGAGCCAAAGAATTTGGTGGAATGGAATTTAAGAAATTGGACAAATGGTTGTGTTAGGAAGGAAGGATTGAACTTAAAGTGTGAGATGTTGAAGATTAATGGATCAAGTGAATTGAAACAAGATGGATTTTTGGTTCATCATTTTATGAAAGTTCCTGATTTTGCTAAGAGATTAGATGGTAATCAAGACGAGTGTAGAAAATTTTGTTTGACAAATTGTTCTTGTGTGGCATATGCATATGATCCTTATATAACTTGTATGTATTGGACCGGAGAGTTAATTGATTTGCAGAAATTTCCTTACGGAGGAGTTGATCTCTTCATTCGTGTGCCGGCAGAACTAGTTGCAGTTGCAGCTCCCGATAATATAAAGAAAAAAGGGAACAACAGTAGTACTTTAATCATTGCAATTACCGGAGGGATAGGAGCATTTACCTTGATTATATGTGCGTATCTTTTGTGGAGGAAATGTTCTCCTAGGCGTAAAGGAAGACAAGCTCAAAACTTGATTAATAGCGAACATAAACAAATGAAATTGGATGAGCTACCACTATATGATTTTGAAAAGCTTGAAACCGCTACAAACAGCTTTCACTTTGGTAATATGCTTGGGAAGGGAGGTTTTGGCCCCGTATACAAGGGAATAATGGAAGATGGGCAAGAAATTGCTGTGAAAAGACTCTCAAAAGCATCTGGACAGGGAATAGAAGAATTCATGAACGAAGTAGTAGTGATTTCTAAACTTCAACATCGCAATCTTGTACGACTTCATGGTTGTTGTGTTGAAAGGGGCGAGCAAATGTTGGTTTATGAGTTCATGCCAAATAAGAGTTTGGATGCTCTTCTTTTTGATCCACTACAAAAGAAAAATTTAGATTGGAAAAAGCGGTTGACCATAATCGAAGGAATAGCTCGAGGTATACTTTATCTTCATAGAGACTCAAGACTAAGGATTATACATAGAGATTTAAAAGCAAGCAACATCTTACTTGATGGCGACATGATTCCAAAAATATCAGACTTTGGTTTAGCTAGAATTGTTAAAGGTGGAGAAGATGATGAAGCTAACACAAAAAGGGTCGTCGGAACTTATGGTTATATGCCGCCTGAATACGCAATGGAGGGGCTTTTCTCTGAAAAATCAGATGTTTATAGCTTTGGAGTTTTATTGCTAGAGATTGTTAGCGGACGAAGAAATAGTAGCTTTTATCACCACGAGGATTCCCTTAGCCTCGTAGGCTTTGCATGGAAGCTATGGTTAGAAGAAAACATTATATCTCTAGTAGATCAAGAGGTATGGGATGAATGTTCTGAAAGCAGCATGTTAAGGTGCATACACATAGGACTTCTATGTGTGCAAGAACTTCCAAGAGAAAGACCAAATATATCAACTGTTGTTTTGATGCTTATAAGTGAGATTACACATCTTCCTCCTCCAGGGAAAGTAGCTTTTGTTAACAAGCAAAATTCAAGAAGTACAGAATCTTCTCAAAAAAGTAATCAATCTAACTCTAATAACAATGTAACTATGAGTGATGTCCAAGGCAGGTAA 2490 0.3614 MAFLSHNINHLLITFIIFCSFCSCYSSINDTITLSKSLKDQDTITSNSTNFKLGFFSPINSTNRYLGIWYINETNNIWIANRDQPLKDSNGIVSIHKDGNLVILNKQKGDIIWSTNISTSTNSTAQLDDSGNLILRDINSGETIWDSFSHPADAAVPTMRIGANKITGKKITFVSRKSENDPSSGHFSASLERLDAPEVFIWHDKNIHWRTGPWNGRVFLGSPRMLTEYLFGWRLDHDGDGTDYITYNFADKTKFGILTLTYHGTLKLVEYINKTKFLSLEVDQNECDFYGKCGPFGNCDNSSVPICSCFEGFEPKNLVEWNLRNWTNGCVRKEGLNLKCEMLKINGSSELKQDGFLVHHFMKVPDFAKRLDGNQDECRKFCLTNCSCVAYAYDPYITCMYWTGELIDLQKFPYGGVDLFIRVPAELVAVAAPDNIKKKGNNSSTLIIAITGGIGAFTLIICAYLLWRKCSPRRKGRQAQNLINSEHKQMKLDELPLYDFEKLETATNSFHFGNMLGKGGFGPVYKGIMEDGQEIAVKRLSKASGQGIEEFMNEVVVISKLQHRNLVRLHGCCVERGEQMLVYEFMPNKSLDALLFDPLQKKNLDWKKRLTIIEGIARGILYLHRDSRLRIIHRDLKASNILLDGDMIPKISDFGLARIVKGGEDDEANTKRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNSSFYHHEDSLSLVGFAWKLWLEENIISLVDQEVWDECSESSMLRCIHIGLLCVQELPRERPNISTVVLMLISEITHLPPPGKVAFVNKQNSRSTESSQKSNQSNSNNNVTMSDVQGR* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2542 829 Gene3D Phosphorylase Kinase; domain 1 483 585 - -
Tpr5g2542 829 Pfam Protein tyrosine and serine/threonine kinase 511 780 IPR001245 GO:0004672|GO:0006468
Tpr5g2542 829 CDD STKc_IRAK 516 782 - -
Tpr5g2542 829 Gene3D Transferase(Phosphotransferase) domain 1 586 789 - -
Tpr5g2542 829 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 828 - -
Tpr5g2542 829 SMART serkin_6 510 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g2542 829 CDD B_lectin 35 151 IPR001480 -
Tpr5g2542 829 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 19 828 - -
Tpr5g2542 829 Pfam S-locus glycoprotein domain 209 317 IPR000858 GO:0048544
Tpr5g2542 829 CDD PAN_AP_plant 344 424 - -
Tpr5g2542 829 SUPERFAMILY Protein kinase-like (PK-like) 495 815 IPR011009 -
Tpr5g2542 829 MobiDBLite consensus disorder prediction 800 829 - -
Tpr5g2542 829 Pfam PAN-like domain 352 409 IPR003609 -
Tpr5g2542 829 Gene3D - 23 149 IPR036426 -
Tpr5g2542 829 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 216 IPR036426 -
Tpr5g2542 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Tpr5g2542 829 ProSiteProfiles Bulb-type lectin domain profile. 29 148 IPR001480 -
Tpr5g2542 829 ProSiteProfiles PAN/Apple domain profile. 340 424 IPR003609 -
Tpr5g2542 829 PIRSF SRK 1 829 IPR024171 GO:0004674
Tpr5g2542 829 SMART blect_4 35 151 IPR001480 -
Tpr5g2542 829 SMART ntp_6 351 423 IPR003609 -
Tpr5g2542 829 Pfam D-mannose binding lectin 77 177 IPR001480 -
Tpr5g2542 829 ProSiteProfiles Protein kinase domain profile. 510 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2542 Tpr-Chr5 47409128 47428175 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2542 430 797 Receptor kinase-like Gene Family AT4G23230 53.117 2.27e-122 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr5g2542 PK_Tyr_Ser-Thr 2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2542 - - mtr:MTR_8g013600 1291.56