Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2538 ATGGAAAATCGTCAAAGAATAACACTTTACGACCAAATGATTTCCGGTAACACAAGCAACAACAACAACACAAGAATCTCACTTGCTAGTTTAATCAAAAACGACGCCGTTTTAACCAACCAAAAAACCCCAAACCAAACACTCTTAGACATTATACGAGAAAACGAACCCAACAACAACAACAACGTTGTTAATGTTAACAACAATCGAAAATCATGGAAAGGTTTTAAGGAATTACTTCGTTTAAAGCGTCGTAACTCGGACGAGTCAACTCACCAACAACAAAACGACGCCGTTCGAGATAATGTTGTGAACAATTCCGATCTGACAGAGTTTCTTGCCGGCGGTGAATCTTCCGACGAGGAAATTAACGTTGATAATTCGGAGACAGCGGCGCAGGTTAGTATGTCGTTGATGGATTTGTTGGAAGAGAGTGAAATTGAATTGGATCGAAGTAGTGATGTTAATGATGATGACGTGGATCAGAATCATGAAGAAGAAGAAGAAAAAGAAGAAGGGAATGTTAAGGTGGAACACAATTGTTGCGTGTGTATGGTAAGGCATAAAGGCGCAGCGTTTATACCATGTGGACACACGTTTTGCAGAATGTGTTCAAGAGAACTTTGGGTTAGTAGAGGGAATTGTCCTCTTTGCAATCATTTTATATTAGAAGTTCTTGATATTTTCTAA 690 0.3899 MENRQRITLYDQMISGNTSNNNNTRISLASLIKNDAVLTNQKTPNQTLLDIIRENEPNNNNNVVNVNNNRKSWKGFKELLRLKRRNSDESTHQQQNDAVRDNVVNNSDLTEFLAGGESSDEEINVDNSETAAQVSMSLMDLLEESEIELDRSSDVNDDDVDQNHEEEEEKEEGNVKVEHNCCVCMVRHKGAAFIPCGHTFCRMCSRELWVSRGNCPLCNHFILEVLDIF* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2538 229 Pfam Zinc finger, C3HC4 type (RING finger) 178 223 - -
Tpr5g2538 229 PANTHER OS01G0917900 PROTEIN 121 229 - -
Tpr5g2538 229 PANTHER OS01G0917900 PROTEIN 11 107 - -
Tpr5g2538 229 MobiDBLite consensus disorder prediction 149 172 - -
Tpr5g2538 229 MobiDBLite consensus disorder prediction 85 104 - -
Tpr5g2538 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 229 IPR013083 -
Tpr5g2538 229 CDD RING-HC 181 218 - -
Tpr5g2538 229 PANTHER OS01G0917900 PROTEIN 11 107 - -
Tpr5g2538 229 PANTHER OS01G0917900 PROTEIN 121 229 - -
Tpr5g2538 229 SUPERFAMILY RING/U-box 180 225 - -
Tpr5g2538 229 SMART ring_2 181 218 IPR001841 -
Tpr5g2538 229 MobiDBLite consensus disorder prediction 150 168 - -
Tpr5g2538 229 ProSiteProfiles Zinc finger RING-type profile. 181 219 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2538 Tpr-Chr5 47347490 47348868 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2538 3 229 C3H Transcription Factor Family AT3G25030 35.985 6.83e-38 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2538 - - cam:101511225 273.863