Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2535 ATGGCTGGCATAGCATTTGGAAGGTTTGATGATTCTTTTAGCTTTGGGTCAATTAAGGCCTATATTGCTGAGTTCATCTCAACTTTGCTCTTTGTTTTTGCTGGTGTTGGTTCAGCCATAGCCTATGGTAAGTTGACATCAGATGCAGCACTTGATCCAGCTGGTTTACTAGCGGTTGCTGTTTGCCACGGTTTTGCATTGTTTGTTGCTGTTTCAGTTGGTGCAAACATTTCTGGTGGTCATGTTAACCCTGCTGTCACTTTTGGATTGGCTGTTGGTGGACAGATCACCATCATCACTGGTATCTTCTACTGGATTGCTCAGCTTCTTGGTTCCATAGTTGCATGTTATCTTCTTCAGTTTGTCACTGGAGGCTTGGAAACTCCAATCCACAGTGTGGCAGCTGAAGTAGGACCAATTGGAGGAGTTGTTACTGAAATAATCATAACATTTGGTTTGGTATACACAGTTTATGCCACAGCAGCTGACCCAAAGAAAGGTGCAATAGGCACAATTGCACCCATTGCAATTGGTTTCATTGTTGGTGCAAACATATTGGCAGCAGGCCCATTCTCTGGTGGATCAATGAACCCAGCAAGATCTTTTGGGCCTGCAGTTGTTAGTGGTAATTTCCATGACAACTGGATCTATTGGGCTGGGCCTCTTATTGGTGGTGGTTTGGCTGGGCTTGTCTATGGCAATTTGTTCATCCACTCTGAACATGCTCCTCTTTCTAGTGATTTTTGA 747 0.4404 MAGIAFGRFDDSFSFGSIKAYIAEFISTLLFVFAGVGSAIAYGKLTSDAALDPAGLLAVAVCHGFALFVAVSVGANISGGHVNPAVTFGLAVGGQITIITGIFYWIAQLLGSIVACYLLQFVTGGLETPIHSVAAEVGPIGGVVTEIIITFGLVYTVYATAADPKKGAIGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFHDNWIYWAGPLIGGGLAGLVYGNLFIHSEHAPLSSDF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2535 248 SUPERFAMILY Aquaporin-like 13 242 IPR023271 -
Tpr5g2535 248 TIGRFAM MIP: MIP family channel proteins 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr5g2535 248 CDD MIP 19 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr5g2535 248 Gene3D Glycerol uptake facilitator protein. 2 247 IPR023271 -
Tpr5g2535 248 PANTHER MIP PROTEIN 1 248 - -
Tpr5g2535 248 Pfam Major intrinsic protein 16 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr5g2535 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Tpr5g2535 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr5g2535 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr5g2535 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr5g2535 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr5g2535 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr5g2535 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr5g2535 248 PANTHER AQUAPORIN-8 1 248 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2535 Tpr-Chr5 47334368 47336780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2535 1 248 Major Intrinsic Protein MIP AT3G16240 80.000 1.33e-140 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2535 K09873 - gmx:100803901 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2535 5 47334368 47336780 Tpr5g2535 5 47334368 47336780 ECH