LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr5g2516	ATGACTTCCAATATTTGTCTCCACATGTTGTTCTATTATATCACAAGCCTTCACATCATTTCTACATTGGCTCACTCTGATAATTATATCATTCACATGAATTTATCAGCTATGCCAACAATATTCTTAAATCAACATAGTTGGTATGAATCCACTCTTTCTCAAGTTACTCCTACCAATAATAATTTCAAGTCTACATCTTCTAAAATCATTTATACATACAACAATGTTATGAATGGTTTTAGTGCAAATCTATCACCTGAAGAGCATGAAGCTCTCAAAACCTCCCATGGTTACATTTCATCAATACCAGATTTACCCTTGAAGCTTCATACAACTCACTCACCTCAATTCCTTGGTCTTAATCCCTACAAAGGAGCATGGCCAGCCTCTGATTTTGGCAAAGATGTCATTGTTGGTGTGGTTGACACTGGTGTTTGGCCAGAAAGTGAAAGTTTCAATGATAAGGGAATGACTAAAATTCCTTCAAAATGGAAAGGTCAATTATGTCAATTTGAAAATACCAACAATTCATCTTTGTGCAACAAGAAACTCATTGGAGCCAGGTACTTTAACAAAGGATTCTTGGCGAAATATTCTAACATTAGTAGAATAATTGTTAACACGACACGTGACACATTCGGTCATGGGACCCACACTTCATCAATAGCAGCTGGAAGCAGAGTAGATAATGCATCTTTTGTTGGTTTAGCAAATGGAACAGCAACGGGAATAGCTTCATTGTCTAGACTAGCCATTTACAAGGTTGGGTGGGGACCAGATGATGTTGCATCCGATATATTAGCTGGAATTGATGCCGCAATATCTGACGGTGTTGATGTTCTTTCAATTTCATTTGGCTTTAACAGAATTGTGCCTTTGTATGAAAATGTTATTTCTATAGCAACATTTGCAGCTATGGAAAAAGGTATTTTTGTGTCTGCATCAGCCGGTAACGGTGGACCTTCCTTTAATACTATGGACAATGGAATACCATGGGTGACAACTGTTGCTGCTAGTACTTTAGACCGCGAATTTCATGGAAATCTTACACTTGGTAATGGAGTCTCGGTCATTGGCTTCTCTTGTTATCCTGGTAAATTCTCCACTAGCAATTTTCCAATTGTTTTCATGGGTATGTGTGACAATGTTAAAGAACTAATCAAAGTAAAGAGCAAGATTGTGGTTTGTGAATTTAAAAAAGGAACTTTAGCTAATCTTGTCAAACCAATTCAGAATTTAATTGCAGCAAAAGTTGTTGGAAGTGTTCTCATAACAAACACAATACAAATTGATGAATTTTCACTCTCAAGTGCGATCCCAATCCCATCTATCATTATTAACCCCAAAAATGGAGAGATTGTAAAAGATTTCATCAAGAGAACCTCTTACTCAAGTTCAATAGCAAAAATGTCTTTCAAGATAACATCTTTTGATGTTAGACCGGCGCCTAGTGTGGATTTTTATAGTTCAAGAGGACCTTCAAAGAATTGTCCATATGTTTTGAAACCCGACATTACAGGTCCTGGTACATCAATCTTAGCAGCATGGCCCACAAATATTCCTGTGTTGGATTTTGAATCTTACAATAAGTTTAATATTTTATCCGGAACATCTATGTCATGCCCTCATATTGCTGGTGTTGCGGCGCTTTTAAAAGGTGCGCACGATGATTGGAGCCCTGCGGCCATTCGGTCGGCAATAATGACAACATCAGACATATTTGATAATACTAATGAACACATCAAAGACATTGGAACAGGTAACAAAGCAACGCCTCTTGCATTGGGAGCTGGTCATGTTAATCCTAATAGAGCACTTGACCCTGGTCTTATTTATGATGCTGGTGTACAAGATTATGTTAATCTTCTTTGTGCACTTAACTTCACACAAAAAAACATCACTACCATTACAAGTTCATCTGTTAATGATTGCTCTAAACCTTCATTAGATCTCAATTACCCTTCTTTTATTGCTTTCTTCAATGCTGGAAATTCTTCAAAGATAACCCAACATTTTCATAGAACAGTTACTAATGTTGGCGAAGGACAAACAACGTATGTTGCTAGCATTACACCAATTAAAAGGTTTCATATCAACGTTATCCCAAATAAGTTGGTGTTCAAGAAGAAGAACCAGAAGATAAGCTACAGGTTGAGCATTGAAGGTCCAAGAATGATACAAAAGAATAAAGTATCTTTTGGATATCTTACTTGGAAGGATGAGAAGCATGTAGTCAGGAGTCCTATTGTTGTAACCACCCATAGTTTCAATTTGTAG	2280	0.3693	MTSNICLHMLFYYITSLHIISTLAHSDNYIIHMNLSAMPTIFLNQHSWYESTLSQVTPTNNNFKSTSSKIIYTYNNVMNGFSANLSPEEHEALKTSHGYISSIPDLPLKLHTTHSPQFLGLNPYKGAWPASDFGKDVIVGVVDTGVWPESESFNDKGMTKIPSKWKGQLCQFENTNNSSLCNKKLIGARYFNKGFLAKYSNISRIIVNTTRDTFGHGTHTSSIAAGSRVDNASFVGLANGTATGIASLSRLAIYKVGWGPDDVASDILAGIDAAISDGVDVLSISFGFNRIVPLYENVISIATFAAMEKGIFVSASAGNGGPSFNTMDNGIPWVTTVAASTLDREFHGNLTLGNGVSVIGFSCYPGKFSTSNFPIVFMGMCDNVKELIKVKSKIVVCEFKKGTLANLVKPIQNLIAAKVVGSVLITNTIQIDEFSLSSAIPIPSIIINPKNGEIVKDFIKRTSYSSSIAKMSFKITSFDVRPAPSVDFYSSRGPSKNCPYVLKPDITGPGTSILAAWPTNIPVLDFESYNKFNILSGTSMSCPHIAGVAALLKGAHDDWSPAAIRSAIMTTSDIFDNTNEHIKDIGTGNKATPLALGAGHVNPNRALDPGLIYDAGVQDYVNLLCALNFTQKNITTITSSSVNDCSKPSLDLNYPSFIAFFNAGNSSKITQHFHRTVTNVGEGQTTYVASITPIKRFHINVIPNKLVFKKKNQKISYRLSIEGPRMIQKNKVSFGYLTWKDEKHVVRSPIVVTTHSFNL*	760

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr5g2516	759	ProSitePatterns	Serine proteases, subtilase family, serine active site.	537	547	IPR023828	-
	Tpr5g2516	759	SUPERFAMILY	Subtilisin-like	110	611	IPR036852	GO:0004252\|GO:0006508
	Tpr5g2516	759	Pfam	Fibronectin type-III domain	651	752	IPR041469	-
	Tpr5g2516	759	Gene3D	-	624	755	-	-
	Tpr5g2516	759	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	16	111	IPR037045	-
	Tpr5g2516	759	CDD	Peptidases_S8_3	108	573	IPR034197	-
	Tpr5g2516	759	Gene3D	Peptidase S8/S53 domain	136	620	IPR036852	GO:0004252\|GO:0006508
	Tpr5g2516	759	ProSiteProfiles	Serine proteases, subtilase domain profile.	107	607	-	-
	Tpr5g2516	759	PANTHER	PUTATIVE-RELATED	18	756	-	-
	Tpr5g2516	759	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	18	756	IPR045051	-
	Tpr5g2516	759	Pfam	Subtilase family	134	578	IPR000209	GO:0006508\|GO:0008236
	Tpr5g2516	759	Gene3D	-	343	478	-	-
	Tpr5g2516	759	Pfam	Peptidase inhibitor I9	29	111	IPR010259	-
	Tpr5g2516	759	PRINTS	Subtilisin serine protease family (S8) signature	134	153	IPR015500	-
	Tpr5g2516	759	PRINTS	Subtilisin serine protease family (S8) signature	212	225	IPR015500	-
	Tpr5g2516	759	PRINTS	Subtilisin serine protease family (S8) signature	536	552	IPR015500	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr5g2516	Tpr-Chr5	46996727	46999006	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr5g2516	1	742	Subtilisin-like Serine Gene Family	AT5G67090	42.029	0.0	567

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr5g2516	-		-	gmx:100786751	957.977