Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2510 ATGACACAAACAACAACAACCTCTTCAGAAACAACCACAACCTCAAACTCCTCAACCTCTTCAACATCTTCACAACTTTCACATTCAACCCAAAACAAAAGCCCAACAAAACCAGCCCAAAAGCCCAAAGACACCAAACACCCAACTTACCATGGTGTTAGAAAACGCAATTGGGGTAAATGGGTTTCAGAAATTCGTGAACCAAAAAAAAAATCAAGAATTTGGTTAGGAACATTCTCAACACCAGAAATGGCAGCAAGAGCACATGATGTAGCAGCTTTAACAATCAAAGGAAAAACCGCAATTCTAAATTTTCCTCATTTATCAAACATGTTACCTAGACCTGCCACGTCAGCACCACGTGACATTCAAGCTGCAGCTACTGCAGCAGCTGCTATGGTTGACTTTGATGATGATGATGTGCACGTGACAGAACAACAATGTTGTTGTGATGATGAATCTGAGGAACAAGAACAAGAACTTAGTCAGATTGTTGAACTTCCTAAAATTAATGAAGATGGTGAAGATGACTCGGTTGTTGACTCAGTTAATGCTGCTGAGTTTGTTTTGCTTGATGACTCGGTAATTCATAGTAGTAATTGGGTTTATCATCTTTCTCATGAGTCAATTGGGTTTGAAGGAATTGAATTTTATTCAAATTTTTCTGATGATTTTTTTATTCCCATTTGGGATTAA 696 0.3807 MTQTTTTSSETTTTSNSSTSSTSSQLSHSTQNKSPTKPAQKPKDTKHPTYHGVRKRNWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAALTIKGKTAILNFPHLSNMLPRPATSAPRDIQAAATAAAAMVDFDDDDVHVTEQQCCCDDESEEQEQELSQIVELPKINEDGEDDSVVDSVNAAEFVLLDDSVIHSSNWVYHLSHESIGFEGIEFYSNFSDDFFIPIWD* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2510 231 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Tpr5g2510 231 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Tpr5g2510 231 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Tpr5g2510 231 Pfam AP2 domain 49 98 IPR001471 GO:0003700|GO:0006355
Tpr5g2510 231 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 224 - -
Tpr5g2510 231 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Tpr5g2510 231 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Tpr5g2510 231 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Tpr5g2510 231 MobiDBLite consensus disorder prediction 1 38 - -
Tpr5g2510 231 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Tpr5g2510 231 MobiDBLite consensus disorder prediction 1 55 - -
Tpr5g2510 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2510 Tpr-Chr5 46928412 46929625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2510 1 201 AP2-EREBP Transcription Factor Family AT5G11590 44.444 7.45e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr5g2510 AP2 6.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2510 K09286 - gmx:100804056 200.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2510 5 46928412 46929625 Tpr5g2510 5 46928412 46929625 ECH