Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2507 ATGGAAGCACCGGATTACTTTGTCGGTGGCTACTACGGTGCCGGAGTTCACGGCGGAATCGACCAATTCTCACCGGAAAAACGTCATATTCACGGTGGTGGTGCTGACCAGAAGCCCTGTGAGTCTTTTGCCATTGATGACTTACTTGATTTCTCCAATGCTGATGCTATTATGTCTGACGGTTTCTTCGACAATGTCGCCGGTAATTCCACCGACTCTTCCAATGTTACCGCCGTTGATAGCTGTAACTCGTCTGGCTCCGGCGGCGAAAATCGCTTTTCAGGCACAATTGTTCCGTATGGTTTCTCCGGTGATGTTCAACTCAACGGTGAACTCTGTGTTCCGTATGATGAAATGGCGGAATTGGAATGGCTTTCGAATTTCGTGGAAGATTCATACTCCGCCGAAGAGGAATTGAAAACACTGCAACTTCTCTCCGGGGCCGGCGCCGTCAAACCACAGACACCAGAATCCTCCTCTTCCACCGACACTCACACGGCGTTTTCATCTGACGAGAGTGGTCGGAACTTTAACGCGTCGTTTCTCGGACCGGAAACACCTCTTCCTGGAAAAGCAAGGAGCAAACGCTCACGCGCTGCACCAGGCGACTGGTCCACGCGCCTACTTCATATCCCTGACGCGCCACCACAACAGATGAAAATTGTTCAAGTGAAAAAACGTGAGGATCCAAATGTAGAATGTTCTGGAAGGAAATGTCTCCACTGTGGCACTGATAAAACACCGCAGTGGAGAACCGGTCCAATGGGACCGAAAACACTTTGCAATGCTTGCGGTGTTAGGTTTAAGTCCGGTAGGTTGGTGCCGGAGTATCGACCGGCGGCAAGTCCAACTTTTGTATCGGCTAAGCATTCGAATTCGCATAGGAAAGTTTTGGAACTAAGGAGGCAGAAAGAGATGCAAAGATCACAGCATCAACAACTTCTGAGTCACAGTTCAATTTTCGGCGTATCATCTAACGGTGGAGATGACTTCATCAATTATCATCATCATCATTGTGGGCCAGAATTTAGGCATGTTATTTAG 1044 0.4875 MEAPDYFVGGYYGAGVHGGIDQFSPEKRHIHGGGADQKPCESFAIDDLLDFSNADAIMSDGFFDNVAGNSTDSSNVTAVDSCNSSGSGGENRFSGTIVPYGFSGDVQLNGELCVPYDEMAELEWLSNFVEDSYSAEEELKTLQLLSGAGAVKPQTPESSSSTDTHTAFSSDESGRNFNASFLGPETPLPGKARSKRSRAAPGDWSTRLLHIPDAPPQQMKIVQVKKREDPNVECSGRKCLHCGTDKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSAKHSNSHRKVLELRRQKEMQRSQHQQLLSHSSIFGVSSNGGDDFINYHHHHCGPEFRHVI* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2507 347 MobiDBLite consensus disorder prediction 152 180 - -
Tpr5g2507 347 PANTHER GATA TRANSCRIPTION FACTOR 9 1 347 - -
Tpr5g2507 347 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Tpr5g2507 347 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
Tpr5g2507 347 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Tpr5g2507 347 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
Tpr5g2507 347 PANTHER GATA TRANSCRIPTION FACTOR 1 347 - -
Tpr5g2507 347 MobiDBLite consensus disorder prediction 148 215 - -
Tpr5g2507 347 Gene3D - 234 315 IPR013088 GO:0006355|GO:0008270
Tpr5g2507 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 236 296 - -
Tpr5g2507 347 SMART GATA_3 233 283 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2507 Tpr-Chr5 46895442 46897087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2507 41 347 C2C2-Gata Transcription Factor Family AT4G32890 48.113 2.13e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr5g2507 GATA 7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2507 - - cam:101510199 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2507 5 46895442 46897087 Tpr5g2507 5 46895442 46897087 ECH