Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2506 ATGTCAATGGTCTGCAAGGATGGTAGTAATAATAAGCACTTAATGGATAATGGTAAGTATGTCCGTTATACACCTGAGCAGGTTGAAGCTCTTGAAAGGCTTTATCATGACTGTCCTAAACCTAGTTCGATTCGAAGACAACAGCTTATTAGGGAGTGTCCTATTCTCTCTAATATTGAGCCAAGGCAAATCAAAGTTTGGTTCCAAAATAGAAGATGTCGAGAGAAGCAGAGAAAAGAATCTTTCCGGCTGCAAGGTGTGAATAGGAAGTTGACAGCCATGAACAAGTTGCTGATGGAGGAAAATGATAGGTTGCAGAAGCAGGTGTCTCATTTGGTGTATGAGAATGGCTATTTTCGTCAAAACACCCAAAATGCAACCAAAGACACGAGTTGTGAGTCAGTTGTGACTAGTGGTCAGCACAATATGACTAGTCAACATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAAACTTTAGCAGAATTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCATTGCTATTTCTCATGGTTGCACTGGAGTGGCAGCAAGAGCTTGCGGTCTAGTGGGACTAGAGCCCACTAGGGTTGCGGAAATCCTCAAAGATCGTCCTTTGTGGTTTCGCGATTGCCGAGCTGTTGATGTTGTCAATGTGCTGCCCACTGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCACCAACCACATTGGCACCTGCTCGAGATTTCTGGTTGTTACGCTACACTTCTGTTGTAGAAGATGGCAGCCTAGTGATCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCTCCTGTGCCGCATTTTGTTAGAGCTGACATGCTGCCTAGTGGGTACCTGATAAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGACTTGGAGCCATGGAGTGTGCCAGAAGTCCTGCGTCCACTATATGAATCACCAACAGTGCTGGCTCAGAAGACTACTATGGCGGCCTTACGTCATCTAAGGCAGATCTCGCATGAAGTTTCTCAGCCCAATGTCACTGGGTGGGGCAGACGACCAGCAGCTCTCCGCGCACTTAGCCAGAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAAGGATGGACTATGATGGGCAATGATGGTGTAGATGATGTTACTATTCTAGTGAATTCGTCACCTGACAAGTTAATGGGTCTGAATCTTTCCTTTGGCAATGGGTTCCCGTCTGTCAGTAATGCAGTGTTATGTGCCAAGGCCTCAATGCTATTACAGAATGTGCCTCCAGCCATTCTCCTGAGGTTCCTGCGGGAACATAGATCAGAATGGGCCGACAATAACATGGACGCGTACACAGCTGCTGCTATTAAAGTTGGCCCTTGTAGCCTAACAGGTTCTCGCATAGGAAACTATGGGGGTCAAGTTATACTCCCACTAGCGCACACTATTGAGCATGAGGAGTTTTTGGAGGTCATCAAATTGGACGGAGTTGCCCATTCGCCTGAAGACACAATGTTGGCCAGAGAATTGTTTCTGTTGCAACTCTGCAGCGGAATGGATGAGAATGCTATTGGAACCTGTGCAGAACTTATATTTGCTCCAATTGATGCTTCATTTGCTGATGATGCTCCTCTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGGAAGCTTCCAGTCCTAATCGCACTCTTGACCTTGCATCGGCTCTTGACGTTGGTGGCCCTACTGGAAACCGAGCTTCAAGTGATAATGCTGGAAACTCTGGCTGTGTGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGTCATATGCAAGAGAATGTAGCCTGCATGGCACGTCAATATGTTCGCAGTATTATATCATCAGTTCAAAGGGTAGCATTAGCACTTTCTCCTTCTCATTTGAGTTCACATGCTGGGATGAGGTCACCATTAGGTACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTATAGGTGCTACTTGGGTGTGGATCTACTTAAATCTAATAACGAAGGAAAAGAACCCATACTCAAGTCCTTGTGGCATCACTCAGATGCTGTATTATGCTGCACACTAAAGGCATTGCCGGTGTTCACTTTCTCAAACCAGGCAGGGCTTGACATGCTGGAAACTACCCTAGTTGCATTACAAGATATAACTTTGGAGAAAATATTTGATGATCATGGTCGAAAAACACTCTTTTCTGAGTTTCCCCAGATTATCCAACAGGGTTTTGCATGTCTGCAAGGTGGTATTTGTCACTCAAGCATGGGGCGACCTGTCTCGTACGAAAGAGCTATTGCTTGGAAGGTGCTGAATGATGAACAGAATGCTCATTGTATTTGCTTTATGTTTGTGAACTGGTCTTTTGTTTGA 2517 0.4525 MSMVCKDGSNNKHLMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPRQIKVWFQNRRCREKQRKESFRLQGVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYFRQNTQNATKDTSCESVVTSGQHNMTSQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDVVNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVVEDGSLVICERSLKNTQNGPSMPPVPHFVRADMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESPTVLAQKTTMAALRHLRQISHEVSQPNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTMMGNDGVDDVTILVNSSPDKLMGLNLSFGNGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSLTGSRIGNYGGQVILPLAHTIEHEEFLEVIKLDGVAHSPEDTMLARELFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDVGGPTGNRASSDNAGNSGCVRSVMTIAFEFAFESHMQENVACMARQYVRSIISSVQRVALALSPSHLSSHAGMRSPLGTPEAQTLAHWICNSYRCYLGVDLLKSNNEGKEPILKSLWHHSDAVLCCTLKALPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKTLFSEFPQIIQQGFACLQGGICHSSMGRPVSYERAIAWKVLNDEQNAHCICFMFVNWSFV* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2506 838 Pfam Homeodomain 19 77 IPR001356 GO:0003677
Tpr5g2506 838 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 838 - -
Tpr5g2506 838 Pfam START domain 160 368 IPR002913 GO:0008289
Tpr5g2506 838 SMART START_1 159 369 IPR002913 GO:0008289
Tpr5g2506 838 Pfam MEKHLA domain 695 837 IPR013978 -
Tpr5g2506 838 Gene3D - 196 372 IPR023393 -
Tpr5g2506 838 CDD bZIP 71 110 - -
Tpr5g2506 838 ProSiteProfiles START domain profile. 150 350 IPR002913 GO:0008289
Tpr5g2506 838 CDD homeodomain 19 79 IPR001356 GO:0003677
Tpr5g2506 838 Coils Coil 88 108 - -
Tpr5g2506 838 SUPERFAMILY Homeodomain-like 19 80 IPR009057 -
Tpr5g2506 838 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 838 IPR044830 GO:0003700
Tpr5g2506 838 Gene3D - 11 83 - -
Tpr5g2506 838 SMART HOX_1 16 82 IPR001356 GO:0003677
Tpr5g2506 838 CDD START_ArGLABRA2_like 154 369 - -
Tpr5g2506 838 ProSiteProfiles 'Homeobox' domain profile. 14 78 IPR001356 GO:0003677
Tpr5g2506 838 SUPERFAMILY Bet v1-like 159 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2506 Tpr-Chr5 46867830 46875446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2506 8 838 Homeobox Transcription Factor Family AT4G32880 78.095 0.0 1371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr5g2506 START 6.9e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2506 K09338 - gmx:100800165 1570.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2506 5 46867830 46875446 Tpr5g2506 5 46867830 46875446 ECH
Tpr7g4890 7 56852461 56859830 Tpr5g2506 5 46867830 46875446 PCT