Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2485 ATGTGGCAAAGAAGCCACAAGTGTTCTTTAGAGGAGGAGAAGAAATTGGAGCTTAGACTTGGTCCACCTGGTGAAGAAGATTCATACAATGAAAAAAGCATGAAAAATGTCAAAAAAGAAAGAGATGAATCACAACCCTCTTGCACAAATTTGACCAACAAGTCTCAAAAAAGAAATGCAACTAGTCCAGTAGTGGGTTGGCCTCCGATTCGTTCCTGCAGGAAGAACATTGCAAGCGGAAGTTCTTCTAAGCCGCTGACCGAGTCACAGCACGTTGGTCAAGAGAAGGTTGCTACTAGTAACAAACCTATTAGCAACTCTGGAAAAGACTTGTTTGTGAAGATCAATATGGATGGAGTTCCCATTGGGAGAAAAGTAGACATCAATGCTTATGATAGCTATGAAAAACTTTCATCTGCTGTTGATGACCTATTTAGAGGTCTCCTCGAAGCAGAGATAAATTTATCTGATAACAACAAGCAAGAAGAAGATAAAGGCATCATGATGAAAGGTTCATTGATTGGAAGTGGAGAATATACTCTTGTTTATGAAGATAATGAAGGAGACAAGATGCTTGTAGGGGACGTGCCGTGGCACATGTTTGTATCAACCGTGAAGAGGGTTCGAGTGTCCAAGAGTTCTGACCTTCCTGCTTTTAACCCAGGTAGTAAGAAAGACTAG 681 0.4097 MWQRSHKCSLEEEKKLELRLGPPGEEDSYNEKSMKNVKKERDESQPSCTNLTNKSQKRNATSPVVGWPPIRSCRKNIASGSSSKPLTESQHVGQEKVATSNKPISNSGKDLFVKINMDGVPIGRKVDINAYDSYEKLSSAVDDLFRGLLEAEINLSDNNKQEEDKGIMMKGSLIGSGEYTLVYEDNEGDKMLVGDVPWHMFVSTVKRVRVSKSSDLPAFNPGSKKD* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2485 226 MobiDBLite consensus disorder prediction 75 99 - -
Tpr5g2485 226 MobiDBLite consensus disorder prediction 46 62 - -
Tpr5g2485 226 MobiDBLite consensus disorder prediction 1 99 - -
Tpr5g2485 226 Pfam AUX/IAA family 36 217 IPR033389 -
Tpr5g2485 226 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 38 225 IPR003311 GO:0005634|GO:0006355
Tpr5g2485 226 SUPERFAMILY CAD & PB1 domains 102 211 - -
Tpr5g2485 226 ProSiteProfiles PB1 domain profile. 110 213 IPR000270 GO:0005515
Tpr5g2485 226 Gene3D - 105 223 - -
Tpr5g2485 226 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 38 225 - -
Tpr5g2485 226 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2485 Tpr-Chr5 46548259 46552813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2485 113 224 B3 DNA Binding Superfamily AT4G23980 32.143 1.89e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Tpr5g2485 AUX_IAA 3.8e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2485 K14484 - thj:104805925 226.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2485 5 46548259 46552813 Tpr7g4877 7 56690340 56694581 ECH
Tpr5g2485 5 46548259 46552813 Tpr5g2485 5 46548259 46552813 ECH
Tpr7g4877 7 56690340 56694581 Tpr5g2485 5 46548259 46552813 PCT