Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2482 ATGGGAAAAGCTAGTAGGTGGTTCAAGAATTTGTTAGTAGGAAACAAGAAAAAGGAAAAGGAGATGAAGGACCACAATGAAATTAATTCAGGTTTCATGACACCTGACAATACCAACAAAAAGGAGAAGAAAAGATGGAGTTTTGCAAAACAAGGGAAGAATGTGGAAGTTGAGGAACCAAATATTACTCCAAATTCATCTTCTGATACTTCTTGGCTTAGATCCTATATTGCTGATACTGATAATCAGCAGAACAAACATGCAATTGCTGTTGCAGCTGCTACGGCGGCCGCTGCGGATGCTGCTGTTGCCGCCGCTCAGGCTGCCGTGGCGGTTGTGAGACTGACTAGTCATGGAAGAGGTACATTGTTTAGTGGAAGTAGAGAGAAATGGGGTGCTGTAAAGATCCAAACTTTCTTCAGAGGCTATTTGGCAAGGAAAGCTCTTAGAGCATTGAAAGGATTGGTTAAGATTCAAGCTCTTGTTAGAGGCTATCTAGTTAGAAAAAGAGCTGCTGCAACTCTTCACAGTATGCAAGCTCTATTCAGAGCTCAAACTTCTGTTAGAACACAAAGAGCTCGTCGTTCCATGAGCAAAGAAAATCGATTCCTACCTGAAAATCTTGCAAGAAAATCTTTGGAACGATTTGATGAAACAAGGAGTGAGTTTCACAGCAAAAGGTTACCAACATCATTTGAAACATCAATGAATGGATATGATGATCAAAGTCCAAAGATTGTTGAAATTGACACATCATACAAGACAAGAACAAAATCTAGGAGATTTACCTCAACAATGTCTGAATGTGGAGAAGAATTACCACATTGTCACACAATTTCATCATCACCTCTTCCAGGTAGAATCTCAATTCCAGCTGATTGTAGAAATCATCATCATCAACAACAACAAGACTTTGATTGGTATTTCAACAATCTTGAAGACACTAGGTACCCTACGACACATAACACACCGCGTTTCAATCATTCGTCTATGCGTCCAAATATTGCTCCAAACACACCATCAAAAAGTGTTTGTGGTGACACTTTCTTTAAACCTTATTATTACTCAAATTTCCCTAATTACATGGCTAATACTCAGTCATTTAAGGCTAAATTAAGGTCTCATAGTGCTCCTAAACAAAGACCTGAAGTTAAGAAAAGGCTTTCACTCAATGAAATGATGGCTGCAAGAAACAGTATAAGTGGTGTTAGAATGCAAAAGCCACCATCTTCAAATTTTCAGACACAACATGAAGAAGAATCTTGGATTTCTTGA 1275 0.3875 MGKASRWFKNLLVGNKKKEKEMKDHNEINSGFMTPDNTNKKEKKRWSFAKQGKNVEVEEPNITPNSSSDTSWLRSYIADTDNQQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTLFSGSREKWGAVKIQTFFRGYLARKALRALKGLVKIQALVRGYLVRKRAAATLHSMQALFRAQTSVRTQRARRSMSKENRFLPENLARKSLERFDETRSEFHSKRLPTSFETSMNGYDDQSPKIVEIDTSYKTRTKSRRFTSTMSECGEELPHCHTISSSPLPGRISIPADCRNHHHQQQQDFDWYFNNLEDTRYPTTHNTPRFNHSSMRPNIAPNTPSKSVCGDTFFKPYYYSNFPNYMANTQSFKAKLRSHSAPKQRPEVKKRLSLNEMMAARNSISGVRMQKPPSSNFQTQHEEESWIS* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2482 424 MobiDBLite consensus disorder prediction 12 27 - -
Tpr5g2482 424 MobiDBLite consensus disorder prediction 398 424 - -
Tpr5g2482 424 ProSiteProfiles IQ motif profile. 129 157 IPR000048 GO:0005515
Tpr5g2482 424 PANTHER IQ-DOMAIN 5-RELATED 1 410 - -
Tpr5g2482 424 SMART iq_5 151 172 IPR000048 GO:0005515
Tpr5g2482 424 SMART iq_5 128 150 IPR000048 GO:0005515
Tpr5g2482 424 Gene3D - 129 171 - -
Tpr5g2482 424 ProSiteProfiles IQ motif profile. 153 180 IPR000048 GO:0005515
Tpr5g2482 424 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 410 - -
Tpr5g2482 424 MobiDBLite consensus disorder prediction 403 424 - -
Tpr5g2482 424 Pfam Protein of unknown function (DUF4005) 323 408 IPR025064 -
Tpr5g2482 424 MobiDBLite consensus disorder prediction 1 45 - -
Tpr5g2482 424 Pfam IQ calmodulin-binding motif 132 150 IPR000048 GO:0005515
Tpr5g2482 424 Pfam IQ calmodulin-binding motif 156 170 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2482 Tpr-Chr5 46512436 46516157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2482 1 405 IQD Protein Family AT3G16490 52.899 2.24e-107 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2482 - - gmx:100797686 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2482 5 46512436 46516157 Tpr5g2482 5 46512436 46516157 ECH
Tpr7g4876 7 56672077 56674748 Tpr5g2482 5 46512436 46516157 PCT