Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2454 ATGGATGATTTGAATTGGGATGGCTCACAATTTGAAGAGAACACACCAATCATGTGGAATACACAAAACTTTGATGGAGGTTACAACATATCAAACTCTCTTACTCATCAAATACAAGAGATGCATAAAGTTCAAATTGTTAACACATATTCAAATTCTGAAAGAGTGATGCCAAACACAAACCTTTCACAGCATGAAACAACCATGGCAGTCAAATCAAAAGCTGGATCCAGCTGGAGAGAAGAACCTTTAATACCTCAATCATATAAGTCAATTTCACCTTACAATATTATGCCAGATTTCAACATGGCCCACCAACAACAACAACTCAACAACTCTTTTGATTGTTTGCTTTCAGCTAGTAATAGCAACACAGCAGACACTTCTGTTGAAAATGATGATGATGGAATTTCAAAGTTATTTTCTGACTGCAAAAATTTATGGAACTTTAGTTATGTCAGCAGTACTGCAACTTCCTCTGGTGAAGCTGGTAGTAATGTTTCAAATGGTACAAGTTATGAAGCACTGACACATGTACAAACACCGGACAAGGCTTCAATCAGAAGTGTCGGTTCGAATGGTACAAGCTATCTCGCACAAACATCCACACCAGACACACGTTCAATCAGAAGTGTTGGTTCAAATGGTATAAGCTATGAAGCACCGACAAAAATACAGATACTGGACAAACCTTCGATCAGAAGTGTCGGTTCAAATGGTACAGGCTATGAAACACTGACACATACACACACATCAGACACACATTCAATCAGAAGTGTTGGTTCAAATGGTATAAATTATGAAGCACTGACACAAATGAGGACACCAGACACATCTTTGATCAGAAGTGTCAGTGCTACAGATTGTACAAGAAACAAAGACACGCAGTGTCCACTCAGTATTGAACTTGATGAAACAATGTCTCAAAGCTCATCAGATCAATTCATGAATCAAAGAAAAGCAATACAATCAAGTACTATTCATAATTCTTCATCTATTGAAGATGGTTTTAGACTTATCACTGATAAACCACCAAAAAGCAAGAAACCAAGATGTGACAAGGGACCTTGTTCAACTAATATAAATTTTCAACAACCAAATTCATCATCATCAATGTGTTATTCTTCTTCAAATGATCAAGAACCTGATCCAGAAGCAATAGCACAAATGAAGGAAATGATGTATAGAGCTGCAGCATTTAGACCAGTGAATTTTGGAATGGATGATATTGATGTGATTGAAAAAAAGCCTAAAAGGAAGAATGTTAAGATATCAAATGATCCACAAACTGTGGCTGCAAGACATAGAAGGGAAAGAATAAGTGACAGGATTAGGGTTTTGCAAAAGATTGTTCCTGGTGGAAACAAAATGGACACTGCTTCAATGCTTGATGAAGCTGCAAATTATCTCAAGTTTTTAAGGTCACAAGTTAAGGCACTTGAAAGTTTAGGGAACAAAGTTAATTCAATGGATTGTAATCCAAGTAGTATTGCTTTCTCTTTTAACCCTTCTTTTCACATGCAAATTCCTAATCACAACAATCATCATTCACAGGGTTAA 1560 0.3647 MDDLNWDGSQFEENTPIMWNTQNFDGGYNISNSLTHQIQEMHKVQIVNTYSNSERVMPNTNLSQHETTMAVKSKAGSSWREEPLIPQSYKSISPYNIMPDFNMAHQQQQLNNSFDCLLSASNSNTADTSVENDDDGISKLFSDCKNLWNFSYVSSTATSSGEAGSNVSNGTSYEALTHVQTPDKASIRSVGSNGTSYLAQTSTPDTRSIRSVGSNGISYEAPTKIQILDKPSIRSVGSNGTGYETLTHTHTSDTHSIRSVGSNGINYEALTQMRTPDTSLIRSVSATDCTRNKDTQCPLSIELDETMSQSSSDQFMNQRKAIQSSTIHNSSSIEDGFRLITDKPPKSKKPRCDKGPCSTNINFQQPNSSSSMCYSSSNDQEPDPEAIAQMKEMMYRAAAFRPVNFGMDDIDVIEKKPKRKNVKISNDPQTVAARHRRERISDRIRVLQKIVPGGNKMDTASMLDEAANYLKFLRSQVKALESLGNKVNSMDCNPSSIAFSFNPSFHMQIPNHNNHHSQG* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2454 519 Pfam Helix-loop-helix DNA-binding domain 434 473 IPR011598 GO:0046983
Tpr5g2454 519 SMART finulus 430 479 IPR011598 GO:0046983
Tpr5g2454 519 Coils Coil 463 483 - -
Tpr5g2454 519 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 430 483 IPR036638 GO:0046983
Tpr5g2454 519 Gene3D - 429 492 IPR036638 GO:0046983
Tpr5g2454 519 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 424 473 IPR011598 GO:0046983
Tpr5g2454 519 MobiDBLite consensus disorder prediction 357 382 - -
Tpr5g2454 519 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 514 IPR045843 GO:0003700|GO:0006355
Tpr5g2454 519 CDD bHLH_AtIND_like 425 483 - -
Tpr5g2454 519 MobiDBLite consensus disorder prediction 343 382 - -
Tpr5g2454 519 PANTHER TRANSCRIPTION FACTOR BHLH87 1 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2454 Tpr-Chr5 46153447 46156159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2454 336 515 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 62.032 1.88e-60 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr5g2454 HLH 2.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2454 - - gmx:100793975 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2454 5 46153447 46156159 Tpr5g2454 5 46153447 46156159 ECH