Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2447 ATGTCGGTAGAAGTGGAAATATCTCATGAAAATATTTCAACAGGTTCTTATCCTAATGTTAACGAGGAATTAAATAGTGAACCTTATATTGGGATGGAATTCAAAACTGTTGAAAAAGTTAGAGAATTTTACAATTCATTTGCTAAAAGATTGGGTTTTGGAGTACGCGTTCGTTCAACAAAACCAAAAAGAGCTATTTTGGTATGCTGTAATGAAGGTCAACATATGATGAAAAGTTCTAGAAACAAAGAAATCCAATATGACACAAATCAAGCTAAAAGAAAGTGTTCAACTCAAAGAAGTGGTTGTCAAGCTTCACTTATTGTTTCAAGAGGTACAACAGAAGGCAATTGGATTATATGTTCATTTAATAATGATCATAACCATGACATGGTTAGCCCTAGAAGCGTGTCTTATATGAGATGTCATAAAAGGATGAGCACTGCTGCAAAAAGTCTTGTTGAACAATTTAGTGGTTATGTTAAACTCTTTAAACATGGAGTTGATTATTTGATGAATTTGTCATTGTTACTATAA 537 0.3222 MSVEVEISHENISTGSYPNVNEELNSEPYIGMEFKTVEKVREFYNSFAKRLGFGVRVRSTKPKRAILVCCNEGQHMMKSSRNKEIQYDTNQAKRKCSTQRSGCQASLIVSRGTTEGNWIICSFNNDHNHDMVSPRSVSYMRCHKRMSTAAKSLVEQFSGYVKLFKHGVDYLMNLSLLL* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2447 178 ProSiteProfiles WRKY domain profile. 73 132 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr5g2447 178 Pfam FAR1 DNA-binding domain 42 132 IPR004330 -
Tpr5g2447 178 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 18 149 - -
Tpr5g2447 178 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 18 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2447 Tpr-Chr5 46100482 46101018 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr5g2447 FAR1 1.5e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2447 - - mtr:MTR_6g048540 149.058