Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2443 ATGGCGACAGTACCAGGGCCACTCGTATGGGAGATCGTGAAGAAGAACAACTCATTTTTGGTTAAAGAGTTTGGAAATAACACTCAGAGTGTTCAATTCAGCAGAGAGAGTAACAATCTCTACAATCTCAACTCTTACAAGTTCTCTGGTTTGGCAAACAAGAAAACTGTTACCATTCAGCCTGCTGGTAAAGATGCTGTGTTGTTGGCTACAACAAAGGCAAGGAAGCAAAACAAGCCTTCTGCTTTGACTCACAAATCGGTCATGAAGAAGGAGTTCCGCAGGATGGCAAAGGCTGTTCAAAATCAGGTGGCAGATAATTACTACAGGCCTGATCTGAAGAAGGCAGCTCTTGCAAGGCTTAGTGCAGTTCACAGAAGCCTCAAAGTTGCCAAGTCGGGTGTCAAGAAGAGGAATAGACAAGCTTTGAAGGTCCATGGCAGGAAATGA 450 0.4444 MATVPGPLVWEIVKKNNSFLVKEFGNNTQSVQFSRESNNLYNLNSYKFSGLANKKTVTIQPAGKDAVLLATTKARKQNKPSALTHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSAVHRSLKVAKSGVKKRNRQALKVHGRK* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2443 149 PANTHER 60S RIBOSOMAL PROTEIN L28 1 149 IPR002672 GO:0003735|GO:0005840|GO:0006412
Tpr5g2443 149 Gene3D - 7 132 - -
Tpr5g2443 149 Pfam Ribosomal L28e protein family 8 127 IPR029004 -
Tpr5g2443 149 PANTHER 60S RIBOSOMAL PROTEIN L28-1-LIKE 1 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2443 Tpr-Chr5 46071337 46073245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2443 1 142 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 71.329 6.87e-71 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2443 K02903 - gmx:100499921 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2443 5 46071337 46073245 Tpr7g4859 7 56546412 56549161 ECH
Tpr5g2443 5 46071337 46073245 Tpr5g2443 5 46071337 46073245 ECH
Tpr7g4859 7 56546412 56549161 Tpr5g2443 5 46071337 46073245 PCT