Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2424 ATGCCTTCATGTAACAATGTTTTGAACTCAATTGGTGAAATTTCATGGATTTGTCTGAAGAATTTTGATTTCAATTCTTTATGTTCTCAAAGGAGCTTAATAGACACAATCAATATACTCTTTCTATGTGTCTACTTTATATCTTTGATTATCACTATAATCAGAAAAACTTCTACAAATGAAAGCCACAGAAAATTCTGGATTTTCCTTATTGTTTCAATTTGTTGTGGAATTATTAGCATTGCATTTTTCGGTATTGGATTGTGGAATCTCATAGCAAAAACTGATTACTCTGAGAAATTGAATTGGTTAACTTGCATTATCAAAGGATTCATTTGGAGTTCTTTTGCAGTTTCTTTGATTGTTCAAAGAGTCAAATGGATTAGAATATTAAACTCTATATGGTGGTTATCTTCATGTGTATTGGTTTCAGTTATCAACATTGAAATTCTGATAAAAAATCATGCAATTGAAGCTTTAGATATTGTACAGTGGCTTGTACATTTTCTTCTTTTGTATTGTGCTTTCAAAAATGTTGGTTATTTAGGAAATAATAGTGTTCAAGAAGGTTTATCTGAGCCACTATTAGGTCAAAAAATTGAAACTAATCAAACAGGATTAGGTCATGCTAATTTCTTCAGCAAGTTGATTTTCTGTTGGATTAATTCTTTAATCAGTTTAGGTTACTCGAAGCCACTCGGTCTTGAAGATATACCTTCTCTTGTTTCTGAAGATGAATCAAACATGGCTTATCAAAAATTTGTTGATGCTTGGGAATCACTTGTTAGAGAGAGGACTAAGAACAATACAAAGAGTTTGGTTCTTTGGTCTATAGTTAGAATTTACTTGAAAGAAAATTTATTAATTGCATTTTACGCATTAATCAGAACTATTGCTGTTGTAGTTTCATCTCTAATATTGTATGCATTTGTTAGCTACTCGAATAGAACTGAGGAAGATCTTAAAAAAGGTCTTTCTATAGTTGGTTTTTTGATTGTCACCAAGGTGTTCGAGTCTTTGTCGCAAAGACATTGGTTTTTTAACTCAAGGAGATCAGGAATGAAAATGAGATCAGCTCTGATGGTGGCAGTTTATCGAAAGCAGTTAAAGCTTTCTAGCTCGGCAAGGACAAGGCACTCGGCTGGCGAAATTGTGAATTACATTGCAGTTGATGCATATAGAATGGGAGAATTTCCATGGTGGTTTCATAGAACATGGACTTCTGCATTGCAACTTGTTCTTTCTATTGGTGTACTTTTTTGTGTTGTTGGTAATGGTTCTCTTCCTGGTTTAGTCCCTCTTCTTATATGTGGACTTCTCAATGTACCATTTGCAAAGATCATGCAAAAGTGTCAGTCACAGTTTATGATTGCACAGGACGAGCGTCTCCGATCAACTTCAGAGATTCTGAACAGTATGAAGATCATTAAGTTACAATCATGGGAAGAAAAATTCAAGAACTTAGTTGAGTCGCTACGCAATAAAGAGTTTGTTTGGTTGTCTAAGGCACAAATACTGAAAGCTACTAATTCATTTCTTTATTGGATGTCTCCTACGGTTGTTTCTGCTGTTGTTTTCCTTGGATGTGCTGTTACCGGGAGTGCACCATTGAATGCTGAAACCATTTTCACAGTTATTGCAACATTGAAGAACATGGGAGAACCTGTTAGAATGATCCCTGAGGCACTATCTATTATGATTCAAGTTAAGGTTTCGTTTGATCGTCTTAATATATTTTTTCTTGATGAAGAACTAAATAATATTGATAGTGAAAGAAACTTACGGCAATGTTTGGTTAATGCTGTGGAAATTCAAGATGGCAACTTCATTTGGGATCACGAATCTGTCTCCTCAACTTTAAAAGACGTGAATTTAGAAATCAAACGGGGACTGAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCGTCACTTTTGTATGCGATACTTGGAGAGATTCCTAAGATTTCAGGAACTGTTAACGTTGATGGCACATTAGCCTATGTGTCTCAATCGTCTTGGATACAAAGTGGATCAGTTCAAGATAATATACTCTTTGGCAAGCCAATGGACAAAACAAGATATGAGAAAGTAATTAAAGCTTGTGCCTTAGATAAGGATATCAATGATTTTAGCCATGGTGATGTTACAGAAATTGGTCAGAGAGGGATCAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGATATCTATCTCCTTGATGATCCTTTCAGTGCAGTTGATGCACATACAACTTCAATACTATTCAATGATTGTGTCATGACTGCTTTAAGAGAGAAAACAGTGATTCTAGTTACTCATCAAGTGGAGTTTCTCTCAGAAGTTGATACTATATTGATAATGGAGGGTGGAAAAGTTATTCAATCAGGTAGTTATGGGAATCTCCTGACAGCTGGAACAGCCTTTGAACTGCTTGTGAGTGCTCATAAAGACACAATTACTGACTTGAATCAAAATCATGAAAATAAAGGTTCTGAAAATGAGGTTTTGACAAAAAACCAAAGTGAGGGAGAGATTTCTAATATCAAGGGACCAATTGGCACACAGCTTACACAAGAGGAAGAAAAAGTGATTGGTAATGTTGGATGGAAGCCGTTCTGGGATTATATTAATTATTCCAATGGGACATTCATGCTGTGTTTGATTATTTTAGCACAATCTGGTTTTTTGGCTTTGCAGATTGCATCAACTTTTTGGCTTGCTATAGCCATTGAAATTCCAAAAATAACTAACACCACCTTGATTGGTGTTTATGCATTAGTTTCGTTTTCTAGTTCTGGTTTGGTTTATGTAAGATCTTACTTGTCCGCACTTTTGGGATTAAAAGCTTCTACTGCTTTCTTCTCAAGCTTCACCACAGCTATCTTCAAAGCCCCAATGCTTTTCTTTGATTCAACTCCTGTAGGAAGAATTTTAACTAGAGCTTCATCAGATTTGAGTATTTTGGACTTTGATATACCTTGTTCCATCACCTTTGTAGCATCTATAGCAATTGAAATTTTGGTGATAATTTGTGTAATGGTTTCTGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTTGCATCAATATTCATTCAGCAATATTATCAAGCCACTGCAACTCAACTAATACGGATCAATGGAATCACCAAAGCTCCAGTCATGAATTTTGCAGCTGAGACATCACTTGGTGTGGTTACCATAAGAGCATTCAAAATGGTAGATAGATTTTTCGAAAACTACTTAAAACTCGTGGACACAGATGCCTCACTGTTTTTTCACTCTAATGTGACAATGGAATGGGTAGTTTTAAGGATTGAAGCACTTCAAAATTTGACTGTCATCACTTTAGCTTTGTTGCTTATTCTACTACCTCAAGGATATGTATCCCCAGGCCTTGTTGGACTGTCTCTTTCCTATGCTTTTACCTTGACAGGAAACCAAATAAATTGGACTAGATGGTTTTCCAATCTATCTAACTATATTATCTCGGTTGAAAGAATCAAGCAATTCATTCACATACCAGCTGAGCCTCCAGCTATTGTGGATAACAACCGACCTCCATCTTCATGGCCTTCCACGGGCAAGATTGACCTCCAAGGTTTGGAGATTAGATATCGTCCTAATGCTCCATTAGTCCTTAAGGGAATCACTTGTACCTTTAAAGAAGGGAGTAGGGTAGGAGTTGTTGGAAGGACAGGAAGTGGAAAAAGTACACTGATTAGCGCGTTGTTTCGCTTAGTTGAGCCTTCAAGAGGTTATATTCTCATTGATGGGATGAACATATGCTCAATGGGGTTGAAGGATTTGAGAACAAGGCTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGAAGCATTAGGACAAACATGGATCCTCTAGGCCTGTACTCAGATGATGAAATATGGAAGGCTGTGGAGAAATGTCAGCTTAAGGAAACAATCAGCAAGCTACCAAGTCTCCTGGACTCTTCAGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAACGCCAATTGTTTTGTCTTGGAAGAGTTCTACTTAAGAGAAACAGAATTCTAGTTTTGGATGAAGCTACTGCATCCATCGACTCTGCCACAGATGCCACTCTACAAAGAGTGATTAGACAAGAATTTGCAGAATGCACAGTTATAACTGTGGCTCATAGAGTTCCAACTGTAATAGACAGCGACATGGTCATGGTTTTATCTTATGGGAAATTGGTGGAATATGATGAGCCTTCAAAGCTAATGGACACAAACTCTTCATTTTCTAAGCTGGTAGCTGAATATTGGTCGAGTTGCAGGAAGAATTCCTTCACAAATATTAGCAGCCAGCAGCAATGA 4389 0.3696 MPSCNNVLNSIGEISWICLKNFDFNSLCSQRSLIDTINILFLCVYFISLIITIIRKTSTNESHRKFWIFLIVSICCGIISIAFFGIGLWNLIAKTDYSEKLNWLTCIIKGFIWSSFAVSLIVQRVKWIRILNSIWWLSSCVLVSVINIEILIKNHAIEALDIVQWLVHFLLLYCAFKNVGYLGNNSVQEGLSEPLLGQKIETNQTGLGHANFFSKLIFCWINSLISLGYSKPLGLEDIPSLVSEDESNMAYQKFVDAWESLVRERTKNNTKSLVLWSIVRIYLKENLLIAFYALIRTIAVVVSSLILYAFVSYSNRTEEDLKKGLSIVGFLIVTKVFESLSQRHWFFNSRRSGMKMRSALMVAVYRKQLKLSSSARTRHSAGEIVNYIAVDAYRMGEFPWWFHRTWTSALQLVLSIGVLFCVVGNGSLPGLVPLLICGLLNVPFAKIMQKCQSQFMIAQDERLRSTSEILNSMKIIKLQSWEEKFKNLVESLRNKEFVWLSKAQILKATNSFLYWMSPTVVSAVVFLGCAVTGSAPLNAETIFTVIATLKNMGEPVRMIPEALSIMIQVKVSFDRLNIFFLDEELNNIDSERNLRQCLVNAVEIQDGNFIWDHESVSSTLKDVNLEIKRGLKIAVCGPVGAGKSSLLYAILGEIPKISGTVNVDGTLAYVSQSSWIQSGSVQDNILFGKPMDKTRYEKVIKACALDKDINDFSHGDVTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTTSILFNDCVMTALREKTVILVTHQVEFLSEVDTILIMEGGKVIQSGSYGNLLTAGTAFELLVSAHKDTITDLNQNHENKGSENEVLTKNQSEGEISNIKGPIGTQLTQEEEKVIGNVGWKPFWDYINYSNGTFMLCLIILAQSGFLALQIASTFWLAIAIEIPKITNTTLIGVYALVSFSSSGLVYVRSYLSALLGLKASTAFFSSFTTAIFKAPMLFFDSTPVGRILTRASSDLSILDFDIPCSITFVASIAIEILVIICVMVSVTWQVLIVAVPAMVASIFIQQYYQATATQLIRINGITKAPVMNFAAETSLGVVTIRAFKMVDRFFENYLKLVDTDASLFFHSNVTMEWVVLRIEALQNLTVITLALLLILLPQGYVSPGLVGLSLSYAFTLTGNQINWTRWFSNLSNYIISVERIKQFIHIPAEPPAIVDNNRPPSSWPSTGKIDLQGLEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGYILIDGMNICSMGLKDLRTRLSIIPQEPTLFKGSIRTNMDPLGLYSDDEIWKAVEKCQLKETISKLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDATLQRVIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMDTNSSFSKLVAEYWSSCRKNSFTNISSQQQ* 1463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2424 1462 SUPERFAMILY ABC transporter transmembrane region 275 582 IPR036640 GO:0005524|GO:0016021
Tpr5g2424 1462 Pfam ABC transporter 1227 1375 IPR003439 GO:0005524
Tpr5g2424 1462 Pfam ABC transporter 620 754 IPR003439 GO:0005524
Tpr5g2424 1462 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1212 1444 IPR003439 GO:0005524
Tpr5g2424 1462 Gene3D - 1193 1444 IPR027417 -
Tpr5g2424 1462 CDD ABCC_MRP_domain1 602 802 - -
Tpr5g2424 1462 SUPERFAMILY ABC transporter transmembrane region 881 1192 IPR036640 GO:0005524|GO:0016021
Tpr5g2424 1462 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 602 825 IPR003439 GO:0005524
Tpr5g2424 1462 CDD ABC_6TM_ABCC_D2 892 1185 IPR044726 GO:0140359
Tpr5g2424 1462 Gene3D ABC transporter type 1, transmembrane domain 862 1191 IPR036640 GO:0005524|GO:0016021
Tpr5g2424 1462 Gene3D - 610 856 IPR027417 -
Tpr5g2424 1462 Gene3D ABC transporter type 1, transmembrane domain 256 591 IPR036640 GO:0005524|GO:0016021
Tpr5g2424 1462 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 898 1159 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2424 1462 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 61 1453 - -
Tpr5g2424 1462 SMART AAA_5 629 802 IPR003593 -
Tpr5g2424 1462 SMART AAA_5 1236 1428 IPR003593 -
Tpr5g2424 1462 ProSitePatterns ABC transporters family signature. 727 741 IPR017871 GO:0005524
Tpr5g2424 1462 CDD ABCC_MRP_domain2 1208 1428 - -
Tpr5g2424 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1200 1443 IPR027417 -
Tpr5g2424 1462 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 61 1453 - -
Tpr5g2424 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 822 IPR027417 -
Tpr5g2424 1462 Pfam ABC transporter transmembrane region 291 547 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2424 1462 Pfam ABC transporter transmembrane region 898 1159 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2424 1462 CDD ABC_6TM_ABCC_D1 288 576 IPR044746 GO:0140359
Tpr5g2424 1462 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 287 568 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2424 Tpr-Chr5 45884412 45891680 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2424 602 855 Calmodulin-binding Proteins AT2G36910 25.090 6.29e-21 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2424 - - gmx:100784827 2248.78