Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2423 ATGCCTTACTTTTGGAACTCAACAGGTGAAATTTCTGAGCCACTGCTAGCTCAAAAAGTTGAAAGAAAACAAACAGGACTAGGCCATGCTACTTTCCAAAGCAAGTTGATTTTCTCTTGGGTTAATTCTTTACTCAATTTAGGTTACTCAAAGCCACTAGCTCTTGAAGACATACCTTCCCTTGTTTCTGAAGATGAATCAAACATGGCCTATCAAAAATTTGTTCATGCTTGGGAGTCCCTTGTTAGAGAGAGGGGGAAAAATAATACAAAGAGTTTAGTTCTATGGTCTATAGTTAGAACTTACTTAAAAGAAAACTTATTAATAGCATTTTATGCATTAATCAGAACTATTTCTGTTGTAGTTTCACCTTTAATATTATATGCTTTTGTTAACTACTCTAATAGGACTGAGGAAGATCTTAAAAAAGGTCTTTCCATAGTTGGTTTTTTGATTGTCTCAAAAGTATTTGAGTCTTTGCCTCAAAGACATTGGGTTTTTAATTCAAGGAGATCAGGAATGAAAATGAGATCAGCTCTTATGGTGGCAGTTTACCAAAAGCAGCTAAGGCTTTCTAGCTCTGCAAGAACACGACACTCGGCTGGTGAAATTGTGAATTACATTGCAGTTGATGCATATAGAATGGGAGAATTTCCATGGTGGTTTCATACAACATGGACTTCTGCATTGCAACTTATACTTTCGATTGGTGTTCTTTTTGGTGTTGTTGGTATCGGTGCTCTTCCTGGTTTAGTACCTCTTTTCATCTGTGGACTTCTGAATGTACCACTTGCAAGGATCCTACAAAATTGTCAGCTACAATTTATGATTGCACAGGATGAGCGTCTTCGATCGACTTCAGAGATTCTGAATAGTATGAAGATTATTAAGTTACAATCATGGGAAGAAAAATTCAAGAACTTAGTTGAGTCACTACGCGATAAAGAGTTTGTATGGTTATCTAAGACACAGTTCCTGAAAGCTAATAATTCATTTCTTTATTGGATGGCTCCTACAGTTGTTTCTGCTGTTGTTTTCCTTGGATGTGCTGTTACCAAGAGTGCACCTTTGAATGCTGAAACCATTTTCACAATTCTTGCAACATTGAGAAACATGGGAGAACCTGTTAGAATGATCCCTGAGGCTCTATCTATTATGATTCAAGTTAAGGTTTCGTTTGATCGTCTTAATAAGTTTTTGCTTGATGAAGAACTAAACAATGATGATAGTAAAAGAAACTTGCAGCAATGTTCGGTTAATGCTGTGGAAATTCAAGATGGCAACTTCATCTGGGATCATGAATCTGTCTCTACAACTCTAAAAGATGTGAATCTAGAAATCAATCGAGGACAGAAAATTGCAATTTGTGGACCTGTTGGAGCCGGAAAATCGTCACTTTTGTATGCAATACTTGGAGAGATTCCTATGATTTCAGGAACTGTTAATGTAGGTGGCACACTAGCCTATGTCTCTCAATCTGCTTGGATACAAAGTGGAACAGTTCGAGATAATATACTCTTTGGCAAGCCAATGGACACAGCAAGATACGAGAAAGCAATTAAAGCTTGTGCCTTAGATAAGGATATAAGTGACTTTAGCCATGGTGATCTTACAGAAATTGGTCAAAGAGGAATCAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTAGATCAGTCTACTATGACGCTGATATCTATCTCCTTGATGATCCTTTCAGTGCAGTTGATGCACATACAGCTGCAATATTATTCAATGATTGTGTTATGACTGCTTTAAGAAATAAAACAGTCATTCTAGTTACTCATCAAGTGGAGTTTCTCTCACAAGTTGATTCTATCTTGGTAATGGAAGGTGGAAAAGTTATTCAATCAGGTAGTTATGAGAATCTTCTGACAGCTGGAACAGCCTTTGAACTACTTGTGAATGCTCATAAAGACACAATTACTGACTTGAATCAAGATCATTCAAATCAAAATGGCTTTGAAAATGAGGTTTTGACTAAAACTCAAAGTGAGGGAGAGATTTCTAGTATCAAGGGACCAATTGGTACACAGCTTACACAAGAGGAAGAAAAAGTGATTGGTAATGTTGGATGGAAGCCATTCTGGGATTATATTAACTATTCAAAAGGGACATTCATGCTGTGTTCGATTATTTTAGTACATTCTGTTTTTGTGGCTTTCCAGACTGCCTCAACCTTTTGGCTTGCTATAGCCATTGAAATTCCAAAAGTAACTAATGCCACCTTGATTGGAGTTTATGCATTAATTTCTTTTTCTGGTGTTGTTTTTGTTTATGTAAAATCTTACTTGACTGCACTTTTGGGATTAAAAGCTTCTACTGCTTTCTTCTCAAGCTTCACTACATCTATCTTCAATGCTCCGATGGTTTTCTTTGATTCAACTCCTGTTGGAAGAATTTTAACTAGAGCTTCTTCAGATTTAAGTATTTTGGACTTTGATATACCTTATTCCATCACCTTTGTAATATGTGTAGGAATTGAAATTTTGGTGATGATTTGTATAATGGTTTCAGTCACGTGGCAAGTTCTCATTGTTGCTGTTCCTGCACTGGTTGCATCAATATTCGTTCAGCAATATTATCAAGCCACTGCAAGTGAACTAATACGGATCAATGGAACAACCAAAGCTCCAGTCATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACTGTACGAGCATTCAACATGGCAGACAGATTTTTCAAAAACTACTTACAACTTGTGGACACAGATGCCTCACTGTTCTTTCACTCTAATGTGACAATCGAATGGGAAATTTTAAGGATTGAAGCACTTCAAAATTTGACTGTCATCACTGCAGCTTTGTTGCTTATTCTACTACCTCAGGGATATGTATCCCCAGGACTTGTGGGACTGTCACTCTCTTATGCTTTTACCTTGACAGCAGGCCAAATATTTTGGACTAGATGGTTTTCCAACTTATCAAACTATATTATATCTGTTGAAAGAATCAAGCAATTCATTCGCATACCAGCTGAGCCTCCTGCTATTGTGGATGGAAACCGACCTCCATCTTCATGGCCGTCCAAGGGCAAGATTGATCTTCAAGGCTTAGAGATTCGATATCGCCCTAATGCTCCGTTAGTCCTCAAGGGAATCACTTGTACATTTAAAGAAGGGAGCAGGGTAGGAGTTGTTGGAAGGACTGGCAGTGGAAAAAGTACACTGATTAGTGCTTTGTTTCGCCTAGTTGAGCCTTCAAAAGGTGATATCTTTATTGATGGGGTGAACATATGCTCATTGGGGTTGAAGGATTTGAGAATGAGGCTTAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGAAGCATTAGGACAAACCTGGATCCTCTAGGCCTGTACTCAGATGATGAAATATGGAAGGCCGTGGAGAAATGTCAGCTTAAGGAAACAATAAGCAAGCTACCAAGTCTCCTGGACTCTTCAGTGAATGATGAAGGTGGAAATTGGAGCTTAGGACAACGCCAATTGTTTTGTCTTGGAAGAGTTCTACTGAAGAGAAACAGAATTCTTGTTTTGGATGAAGCTACTGCATCCATTGACTCTGCCACAGATGTCATTCTACAAAGAGTGATTAGACAAGAATTTGCAGAATGCACAGTTATAACTGTGGCTCATAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTTTTATCCTATGGGAAATTGGTGGAATATGACGAGCCCTCAAAGCTAATGGACACCAACTCTTCGTTTTATAAGCTGGTAGCTGAATATTGGTCCAGTTGCAGGAAGAATTCCTTCACAAATATTAGCAGCCAGCAGCAATGA 3852 0.3829 MPYFWNSTGEISEPLLAQKVERKQTGLGHATFQSKLIFSWVNSLLNLGYSKPLALEDIPSLVSEDESNMAYQKFVHAWESLVRERGKNNTKSLVLWSIVRTYLKENLLIAFYALIRTISVVVSPLILYAFVNYSNRTEEDLKKGLSIVGFLIVSKVFESLPQRHWVFNSRRSGMKMRSALMVAVYQKQLRLSSSARTRHSAGEIVNYIAVDAYRMGEFPWWFHTTWTSALQLILSIGVLFGVVGIGALPGLVPLFICGLLNVPLARILQNCQLQFMIAQDERLRSTSEILNSMKIIKLQSWEEKFKNLVESLRDKEFVWLSKTQFLKANNSFLYWMAPTVVSAVVFLGCAVTKSAPLNAETIFTILATLRNMGEPVRMIPEALSIMIQVKVSFDRLNKFLLDEELNNDDSKRNLQQCSVNAVEIQDGNFIWDHESVSTTLKDVNLEINRGQKIAICGPVGAGKSSLLYAILGEIPMISGTVNVGGTLAYVSQSAWIQSGTVRDNILFGKPMDTARYEKAIKACALDKDISDFSHGDLTEIGQRGINMSGGQKQRIQLARSVYYDADIYLLDDPFSAVDAHTAAILFNDCVMTALRNKTVILVTHQVEFLSQVDSILVMEGGKVIQSGSYENLLTAGTAFELLVNAHKDTITDLNQDHSNQNGFENEVLTKTQSEGEISSIKGPIGTQLTQEEEKVIGNVGWKPFWDYINYSKGTFMLCSIILVHSVFVAFQTASTFWLAIAIEIPKVTNATLIGVYALISFSGVVFVYVKSYLTALLGLKASTAFFSSFTTSIFNAPMVFFDSTPVGRILTRASSDLSILDFDIPYSITFVICVGIEILVMICIMVSVTWQVLIVAVPALVASIFVQQYYQATASELIRINGTTKAPVMNFAAETSLGVVTVRAFNMADRFFKNYLQLVDTDASLFFHSNVTIEWEILRIEALQNLTVITAALLLILLPQGYVSPGLVGLSLSYAFTLTAGQIFWTRWFSNLSNYIISVERIKQFIRIPAEPPAIVDGNRPPSSWPSKGKIDLQGLEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSKGDIFIDGVNICSLGLKDLRMRLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKAVEKCQLKETISKLPSLLDSSVNDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDVILQRVIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMDTNSSFYKLVAEYWSSCRKNSFTNISSQQQ* 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2423 1283 SMART AAA_5 1057 1249 IPR003593 -
Tpr5g2423 1283 SMART AAA_5 449 630 IPR003593 -
Tpr5g2423 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 422 645 IPR003439 GO:0005524
Tpr5g2423 1283 Pfam ABC transporter 1048 1196 IPR003439 GO:0005524
Tpr5g2423 1283 Pfam ABC transporter 440 574 IPR003439 GO:0005524
Tpr5g2423 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1021 1264 IPR027417 -
Tpr5g2423 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 107 388 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2423 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 644 IPR027417 -
Tpr5g2423 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1033 1265 IPR003439 GO:0005524
Tpr5g2423 1283 CDD ABC_6TM_ABCC_D2 713 1006 IPR044726 GO:0140359
Tpr5g2423 1283 Pfam ABC transporter transmembrane region 110 367 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2423 1283 Pfam ABC transporter transmembrane region 720 979 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2423 1283 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 26 1274 - -
Tpr5g2423 1283 ProSitePatterns ABC transporters family signature. 547 561 IPR017871 GO:0005524
Tpr5g2423 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 726 980 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2423 1283 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 26 1274 - -
Tpr5g2423 1283 CDD ABC_6TM_ABCC_D1 108 396 IPR044746 GO:0140359
Tpr5g2423 1283 Gene3D - 1015 1265 IPR027417 -
Tpr5g2423 1283 CDD ABCC_MRP_domain2 1029 1249 - -
Tpr5g2423 1283 Gene3D ABC transporter type 1, transmembrane domain 683 1012 IPR036640 GO:0005524|GO:0016021
Tpr5g2423 1283 Gene3D ABC transporter type 1, transmembrane domain 83 404 IPR036640 GO:0005524|GO:0016021
Tpr5g2423 1283 SUPERFAMILY ABC transporter transmembrane region 95 402 IPR036640 GO:0005524|GO:0016021
Tpr5g2423 1283 SUPERFAMILY ABC transporter transmembrane region 702 1013 IPR036640 GO:0005524|GO:0016021
Tpr5g2423 1283 CDD ABCC_MRP_domain1 422 622 - -
Tpr5g2423 1283 Gene3D - 429 674 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2423 Tpr-Chr5 45876047 45884301 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2423 422 676 Calmodulin-binding Proteins AT2G36910 25.090 5.83e-20 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2423 - - gmx:100784827 2020.36