Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2422 ATGGCTTACTTTTGGAACTCAATTGGTGAAATTTCATGGATTTGTGTGAAGAATTTTGAGTTCAATTCTTTATGTTCTCAAAGGAGCTTAATAGACACAATCAATATACTCTTTCTTTGTGTCTACTTCATATCTTTGATTATCACTATAATCAGAAAAACTTCTACAAATGAAAGCCACAGAAAATTCAGGATTTTCCTTATTGTTTCAATTTGTTGTGGAATTATTAGCATTGCATTTTTCAGTATTGGATTGTGGAATCTCATAGCAAAAACTGATTACTCTGAGAAATTGAATTGGTTAACTTTCATTATCAAAGGATTCATTTGGATTTCTTTTGCAGTTTCTTTGATTGTTCAAAGAGTCAAATGGATTAGAATATTAAACTCTATATGGTGGTTATCTTCATGTGTATTGGTTTCAGTTATCAACATTGAAATTCTGATAAAAAATCATGCAATTGAAACTTTAGATATTGTACAGTGGCTTGTACATTTTCTTCTTTTGTATTGTGCTTTCAAAAATGTTGGTTATTTAGGAAATAATAATAGTGTTCAAGAAGGTTTATCTGAGCCACTATTAGGTCAAAAAATTGAAACTAATCAAACAGGATTAGGTCATGCTAATTTCTTCAGCAAGTTGATATTCTGTTGGATTAATTCTTTAATCAGTTTAGGTTACTCGAAGCCACTCGATCTTGAAGATATACCTTCTCTTGTTTCTGAAGATGAATCAAACATGGCTTATCAAAAATTTGTTGATGCTTGGGAATCACTTGTTAGAGAGAGGACCAAGAACAATACAAAGAGTTTGGTTCTTTGGTCTATTGTTAGAATTTACTTGAAAGAAAATTTATTAATAGCATTTTATGCATTAATCAGAACCATTGCTGTTGTAGTTTCACCTCTAATATTGTATGCATTTGTTAGCTACTCGAATAGAACTGAGGAAGATCTTAAAAAAGGTCTTTCAATAGTTGGTTTTTTGATTGTCACCAAGGTGTTCGAGTCTTTGTCGCAAAGACATTGGTTTTTTAACTCAAGGAGGTCAGGAATGAAAATGAGATCAGCTTTGATGGTGGCAGTTTATCGAAAGCAGTTAAAGCTTTCTAGCTCGGCAAGGACAAGACACTCGGCGGGCGAAATTGTGAATTACATTGCAGTTGATGCATATAGAATGGGAGAATTTCCATGGTGGTTTCATATAACATGGACTTCTGCAGTGCAACTTGTTCTTTCCATTGGTGTACTTTTCGGTGTTGTTGGTATTGGTGCTCTTCCGGGTTTATTACCTCTTGCTATATGTGGACTTCTCAATGTACCATTTGCAAGGATCATACAAAATTGTCAGTCACAGTTTATGATTGCACAGGACGAACGTCTACGATCGACTTCAGAGATTCTAAATAGTATGAAGATTATTAAGTTACAATCATGGGAAGAAAAATTCAAGAACTTAGTTGAGTCGCTACGCGATAAAGAGTTTGTATGGTTATCTAAGACACAGATACTGAAAGCTACTAATTCATTTCTTTATTGGATGTCTCCTACGGTTGTTTCTGCTGTTGTTTTCCTTGGATGTGCTGTTACCAAGAGTGCACCATTGAATGCTGAAACCATTTTCACAATTCTTGCAACATTGAGGAACATGGGAGAACCTGTTAGAATGATTCCTGAGGCTCTATCTATTATGATTCAAGTTGTGGTTTCTTTTGATCGTCTTAATAAGTTTTTGCTTGATGAAGAACTAAACAATGATGATAGTGAAAGAAACTTACAGCAATGTTCAGTTAATGCTGTGGAAATTCAAGATGGCAACTTCATTTGGGATCATGAGTCTGTCTCTCCAACTTTAAAAGACGTGAATCTTGAAATCAAACGAGGGCAGAAAATTGCAGTTTGTGGACCTGTTGGAGCCGGAAAATCGTCACTTTTGTATGCCATACTTGGAGAGATTCCGAAGATTTCAGGAACTGTTAATGTAGGTGGCACACTAGCCTATGTCTCTCAATCTGCTTGGATACAAAGTGGAACAGTTCGAGAAAATATACTCTTTGGCAAGCCAATGGACACAGCAAGATACGAGAAAGCAATTAAAGCGTGTGCCTTAGATAAGGATATAAGTGATTTTAGCCATGGTGATCTTACAGAAATTGGTCAAAGAGGAATCAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGATATCTATCTCCTTGATGATCCTTTCAGTGCAGTTGATGCACATACAGCTGCAATACTTTTCAATGATTGTGTCATGACTGCTTTAAGAGAGAAAACAGTCATTCTAGTTACTCATCAAGTGGAGTTTCTCTCAGATGTTGATTCTATCTTGGTAATGGAAGGTGGGAAAGTTATTCAATCAGGTAGTTATGAGAATCTCCTAACAGCCGGAACAGCCTTTGAACTACTTGTGAGTGCTCATAAAGACACAGTTACTGACTTGAATCAAGATAATGAAAATAAAAAAGGTTTTGAAAATGAGGTTTTGACTAAAAATCAAAGTGAGGGAGAGATTTCTAGTATCAAGGGACCAATTGGTACACAGCTTACACAAGAGGAAGAAAAAGTGATCGGTAATGTTGGATGGAAGCCATTCTGGGATTATATTAATTATTCCAAAGGGACATTCATGTTGTGTTTGATCATTTTAGGACAATCTGTTTTTTTGGGTTTCCAGACTGCCTCAACCTTTTGGCTTGCTATAGCCATTGAAATTCCAAAAGTAACTAATTTCACCTTGATTGGAGTTTATGCATTGATTTCTTTTGCTAGTGCTGCTTTTGTTTATTTAAGATCTTACTTGACTGCACTTTTGGGATTAAAAGCTTCTACCGCTTTCTTCTCAAGCTTCACTAAAGCTATCTTCAATGCTCCGATGCTTTTCTTTGATTCAACTCCTGTAGGAAGAATTTTAACTAGAGCATCATCAGATATGAGTATTGTGGACTTTGATATACCTTATTCCATCACCTTTGTAATATCTGTTGCAATTGAAATTGTGGTGATAATTTGTGTAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTTGCATCAATATGCGTTCAGCAATATTATCAAGCCACTTCAAGTGAACTAATACGGATCAATGGAACAACCAAAGCTCCAGTCATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACTGTAAGAGCATTCAACATGGTAGACAGATTTTTCAGTAACTACTTAAAACTTGTGGACACAGATGCTTCACTGTTCTTTCACTCTAATGTGACAATGGAATGGGTAGTTTTAAGGATTGAAGCACTTCAAAATTTGACTGTCATCACTGCAGCGTTGTTGCTTATTCTACTTCCTCAGGGATATGTATCCCCAGGTCTTGTGGGACTGTCACTCTCTTATGCTTTAAACTTGACAGGAGCGCAAATATTTTGGAGTAGATGGTTTTCCAACTTATCAAACTATATCATCTCTGTTGAAAGAATCAAACAATTCATTCACATACCAGCAGAGCCTCCTGCTATTGTGGATGGTAACCGACCTCCATCTTCATGGCCGTCCAAGGGAAAGATTGATCTTCAAGGCTTAGAGATTCGATATCGCCCTAATGCTCCGTTAGTCCTCAAGGGAATCACTTGTACATTTAAAGAAGGGAGTAGGGTAGGAGTTGTTGGAAGGACTGGAAGTGGAAAAAGTACTCTTATTAGTGCTTTGTTTCGCCTAGTTGAGCCTTCAAGAGGTGATATTTTCATTGATGGGATGAACATATGCTCAATGGGGTTGAAGGATTTGAGAATGAGGCTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGAAGCATTAGGACAAACCTGGATCCTCTAGGCCTGTACTCAGATGATGAAATATGGAAGGCTGTGGAGAAATGCCAGCTTAAGGAAACAATCAGCAAGCTACCAAGTCTCCTGGACTCTTCAGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAACGCCAATTGTTTTGTCTTGGAAGAGTTCTACTTAAGAGAAACAGAATTCTTGTTTTGGACGAAGCTACTGCATCTATCGACTCTGCCACAGATGCCACTCTACAAAGAGTGATTAGACAAGAATTTGCCGAATGCACAGTTATAACTGTGGCTCATAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTTTTATCTTATGGGAAATTGGTGGAATATGATGAGCCTTCAAAGCTAATGGACACCAACTCGTCATTTTCTAAGCTGGTAGCTGAATACTGGTCCAGTTGCAGGAAGAATTCCTTCACAAATATTAGCAGCCTGCAGTAA 4383 0.3728 MAYFWNSIGEISWICVKNFEFNSLCSQRSLIDTINILFLCVYFISLIITIIRKTSTNESHRKFRIFLIVSICCGIISIAFFSIGLWNLIAKTDYSEKLNWLTFIIKGFIWISFAVSLIVQRVKWIRILNSIWWLSSCVLVSVINIEILIKNHAIETLDIVQWLVHFLLLYCAFKNVGYLGNNNSVQEGLSEPLLGQKIETNQTGLGHANFFSKLIFCWINSLISLGYSKPLDLEDIPSLVSEDESNMAYQKFVDAWESLVRERTKNNTKSLVLWSIVRIYLKENLLIAFYALIRTIAVVVSPLILYAFVSYSNRTEEDLKKGLSIVGFLIVTKVFESLSQRHWFFNSRRSGMKMRSALMVAVYRKQLKLSSSARTRHSAGEIVNYIAVDAYRMGEFPWWFHITWTSAVQLVLSIGVLFGVVGIGALPGLLPLAICGLLNVPFARIIQNCQSQFMIAQDERLRSTSEILNSMKIIKLQSWEEKFKNLVESLRDKEFVWLSKTQILKATNSFLYWMSPTVVSAVVFLGCAVTKSAPLNAETIFTILATLRNMGEPVRMIPEALSIMIQVVVSFDRLNKFLLDEELNNDDSERNLQQCSVNAVEIQDGNFIWDHESVSPTLKDVNLEIKRGQKIAVCGPVGAGKSSLLYAILGEIPKISGTVNVGGTLAYVSQSAWIQSGTVRENILFGKPMDTARYEKAIKACALDKDISDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKTVILVTHQVEFLSDVDSILVMEGGKVIQSGSYENLLTAGTAFELLVSAHKDTVTDLNQDNENKKGFENEVLTKNQSEGEISSIKGPIGTQLTQEEEKVIGNVGWKPFWDYINYSKGTFMLCLIILGQSVFLGFQTASTFWLAIAIEIPKVTNFTLIGVYALISFASAAFVYLRSYLTALLGLKASTAFFSSFTKAIFNAPMLFFDSTPVGRILTRASSDMSIVDFDIPYSITFVISVAIEIVVIICVMVSVTWQVLIVAVPAMVASICVQQYYQATSSELIRINGTTKAPVMNFAAETSLGVVTVRAFNMVDRFFSNYLKLVDTDASLFFHSNVTMEWVVLRIEALQNLTVITAALLLILLPQGYVSPGLVGLSLSYALNLTGAQIFWSRWFSNLSNYIISVERIKQFIHIPAEPPAIVDGNRPPSSWPSKGKIDLQGLEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDIFIDGMNICSMGLKDLRMRLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKAVEKCQLKETISKLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDATLQRVIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMDTNSSFSKLVAEYWSSCRKNSFTNISSLQ* 1461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2422 1460 Pfam ABC transporter transmembrane region 286 545 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2422 1460 Pfam ABC transporter transmembrane region 930 1158 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2422 1460 SMART AAA_5 627 800 IPR003593 -
Tpr5g2422 1460 SMART AAA_5 1235 1427 IPR003593 -
Tpr5g2422 1460 CDD ABC_6TM_ABCC_D2 891 1184 IPR044726 GO:0140359
Tpr5g2422 1460 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 600 823 IPR003439 GO:0005524
Tpr5g2422 1460 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 285 566 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2422 1460 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 897 1159 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2422 1460 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 58 1452 - -
Tpr5g2422 1460 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 58 1452 - -
Tpr5g2422 1460 CDD ABC_6TM_ABCC_D1 286 574 IPR044746 GO:0140359
Tpr5g2422 1460 CDD ABCC_MRP_domain2 1207 1427 - -
Tpr5g2422 1460 SUPERFAMILY ABC transporter transmembrane region 880 1191 IPR036640 GO:0005524|GO:0016021
Tpr5g2422 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1199 1442 IPR027417 -
Tpr5g2422 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 820 IPR027417 -
Tpr5g2422 1460 CDD ABCC_MRP_domain1 600 800 - -
Tpr5g2422 1460 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1211 1443 IPR003439 GO:0005524
Tpr5g2422 1460 SUPERFAMILY ABC transporter transmembrane region 273 580 IPR036640 GO:0005524|GO:0016021
Tpr5g2422 1460 Gene3D - 607 853 IPR027417 -
Tpr5g2422 1460 Gene3D - 1193 1443 IPR027417 -
Tpr5g2422 1460 ProSitePatterns ABC transporters family signature. 725 739 IPR017871 GO:0005524
Tpr5g2422 1460 Pfam ABC transporter 618 752 IPR003439 GO:0005524
Tpr5g2422 1460 Pfam ABC transporter 1226 1374 IPR003439 GO:0005524
Tpr5g2422 1460 Gene3D ABC transporter type 1, transmembrane domain 260 582 IPR036640 GO:0005524|GO:0016021
Tpr5g2422 1460 Gene3D ABC transporter type 1, transmembrane domain 862 1190 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2422 Tpr-Chr5 45865300 45872109 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2422 587 854 Calmodulin-binding Proteins AT2G36910 25.939 1.85e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2422 - - gmx:100784827 2254.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2422 5 45865300 45872109 Tpr5g2422 5 45865300 45872109 ECH