Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2419 ATGCTCCAAAAAATGGTTTACTTTGACTCTTTGAGAATACATGTGGGTAAAGGTGATTTCTCATTGATTTGTCTGAAAGATTTTGATTTCACTTCATTATGTTCTCTAAGGAGCGCAATAGACACGGTCAATATACTTTTTGTCTGTGCCTACTACACGTCTTTGTTTATCGGTTTAATCAGAAAAACTTCTGCAAATAGGAGCCACACAAGAAGTTGGATTTTCAAACTTGTTTCAATCTGCTGTGCTCTTATTAGCATTACTTTTTTGGTTACTGGCTTGTGGAATCTCATAGAGAAAACCGATAACTCTAATGAGCTGAGCTGGTTAGCTTGCAATATCAAAGGAATCATTTGGATTTCTTTAACAATTTCTTTGCTTGTCCAGAGAGGCAAATGGACTAAAATACTAAACTCTGTCTGGTGGGCATCTTCCAGTGTATTGATTTCAGTTCTCAACATTGACATTCTGTTCAAAGGTCATGATGCCTTTGAAACTTTTGATATCATAATATGGCTTGTACACTTTCTTCTTCTATTATGTGCCTTCAAAAATCTTGGTTATTTAGGAACTCACAGTGTCCAAGAATGTTTGTCTGAACCACTGTTAGCTCAGAAAATTGAAACCAAACAAACAGGACTAGCCCATGCTACTTTTCTTAGCAAGTTAATTTTCTCTTGGGTTAACTCTTTACTCAGTTTAGGTTACTCAAAGCCACTAGCTCTTGAAGACATACCTTCCCTTGTTTCTGAAGATGAAGCAAGCACAGCCTATCAAAACTTTGTACATGCATGGGAATCCCTTGTAAAGGAGAGGACTAATAACAGTACAAAGAGCTTAGTTCTTTGGTCTGTAGTTAAAACTTACTTGAAAGAAAACACATTAATAGCATTCTATGCACTACTCAGAACTATTTCTGTTGTAGTTTCACCTCTAATACTCTATGCTTTTGTTAACTACTCAAAAAGAACTGAGCCTAATCTCAAACAAGGTTTTTCCATAGTTGGTTTTCTAATTCTAGCCAAATTGGTAGAGTCTTTGTCTCAAAGACATTGGTTTTTTAACTCAAGGAGGTCAGGAATGAAAATTAGATCAGCTCTGATGGTGGCAATTTATCAAAAGCAGCTAAAGCTTTCTAGCTCAGCAAGGACAAGACACTCGGCAGGCGAAATTGTGAATTACATTGCAGTTGATGCATACAAAATGGGAGAATTCCCATGGTGGTTTCATATAACATGGACTTCTGTATTGCAACTTATTCTGTCCATTGCTATCCTTTTTGGTGTTGTTGGTATTGGTGCTCTTCCTGGTTTAGTCCCTCTTCTTATATGTGGACTTCTCAATGTACCGTTTGCAAGGATCCTACAAAATTGTCAGTCACAGTTTATGACTGCACAGGACGAACGTCTTCGATCAACTTCAGAAATTCTAAATAGTATGAAGATCATTAAGTTACAATCATGGGAAGAAAAATTTAAGAACTTAGTCGAGTCGTTACGCGATAAAGAGTTCGTGTGGTTGTCTAAAGCGCAGATCCTGAAAGCTTCTAGTTCATTTCTTTTTTGGTTGTCTCCTACAGTTATATCTGCTGTTGTTTTCATTGGATGTGCCGTTTCCAAGAGTGCACCATTGAATGCTGAAACCATTTTCACAGTTCTTGCAACATTGAAGAACATGGGGGATCCAGTTAAAATGATCCCAGAGGCTCTATCCATTATGATTCAAGTTAAGGTTTCCTTTGATCGTCTTAATAAATTTTTGCTTGATGAAGAACTAAAAAATGATGACAAAAGTGAAAAAAACCTAAAGCAATGTTCAGCTAATGCTGTGGTAATTCTAGCTGGCAACTTCACTTGGGATCATGAATCTGTGTCCCCAGCTTTAACAGATGTTAATTTAGAAATCAAATGGGGACAGAAAATAGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAATACTTGGAGAGATTCCCAAGATTCAAGGAACTGTTAATGTAGGTGGCACCCTTGCCTATGTTTCTCAATCTTCTTGGATACAAAGTGGAACAGTTCGAGATAATATACTCTTTGGCAAGCCAATGAACAAAAAAAGATACGAGAATGCTATTAAAGTGTGTGCCTTGGATGAGGATATCAATGATTTTAGTCACGGGGATCTTACAGAAATAGGTCAGAGAGGGATTAACCTAAGTGGAGGACAAAAGCAAAGAATTCAACTAGCTCGAGCAGTCTACAAAGATGCTGATATCTATCTCCTCGACGACCCTTTCAGTGCAGTCGACGCGCACACTGCTGCTATTCTGTTCAAGGACTGCATTATGACTGCTCTAAGAGAGAAAACAATCATTCTTGTGACACATCAAGTGGAGTTTCTCCCAGAAGTTGATACAATATTGGTAATGGAGGATGGAAAAGTTATTCAATCAGGCAGTTATGAGAATCTGCTAACAGCTGGGACAGCCTTTGAACAACTTGTGAACGCCCATAAAGACGCAGTTACTGAGGGGAATCAAGATAACAAAAACAAAAGAGGTTCCGAAAATGTTGTTTTGGCTAATCCACAAGAGACACATAGTTTTCATCTCACTAAAAATCAAAGCAAGAGGAAGAGTTCTGCCAGAGGTCAATTTGGGGTACAACTTACAAAAGAGGAAGAAAAAGAGATTGGTGATGTAGGCTTGAAACCATTCTGGGATTATATTTCTTATTCCAGGGGGTCATTCATGTTGTGTTTTATCGTGTTAGCACAGTTTGCTTTTATGGCTTTGCAGACTGCATCAACCTTTTGGCTTGCTATTGCCATTGAAAATCCAAAAGTAACTAGTGCCACATTGATTGGAGTTTATTCCTTAATTTCTTGTGCTGGTGTGATGTTTGTATATCTAAGGTCTTACTTGAATGCGCATCTCGGATTAAAAGCTTCAATTGCATACTTCTCAAGCTTCACTACAGCGATCTTCAATTCTCCTATGATGTTCTTTGATTCGACCCCTGTAGGAAGAATTTTAACCCGAGCTTCATCAGATTTGAGTATTTTGGACTTTGATATGCCTCATTCCATCCACTTTGCATTATCAGTAGCAATTGAAGTACTGGTAATCATTTGCATAATGGTTTCGGTCACATGGCAGGTTCTCATTGTTGCTGTTCCTGCAATGGTGGCATCAATATTCATTCAGCAATATTATCAAGCAACTGCAAGGGAACTAATGCGGATCAATGGAACAACCAAAGCTCCTGTCATGAATTTTGCAGCTGAGACGTCACTTGGGGTGGTTACTGTAAGAGCATTCAACATGGTAGATAGACTTATCAAATACTACTTAAAACTTGTGGACACAGATGCTACGCTGATCTTTTATTCTAACGTGGCCATGGAATGGATGGTTATACGGATTGAGGCACTTCAAAGTTTGACGGTTGTCACTGCAGCTTTGTTTCTTATTATGCTTCCTCATGGATATGTGTCCCCGGGACTTGTGGGACTGTCTCTTTTTTATGCTTTTAATTTGACAGGAGCCCAAATATTTTGTACTCGATGGTTTTCCAACTTATCAAACCACGTAATCTCTGTTGAAAGAATCAAGCAGTTCATTCACATTCCAGCCGAGCCTCCTGCCATTGTGGAGGATAACCGGCCACCATCATCATGGCCTTCCAAGGGTAGGATTGAAGTTCAAGGCATAGAGATTAGATATCGTCCTGACGCTCCATTAGTCCTTAAGGGAATCACTTGTACATTTAAAGAAGGGAGTAGGGTGGGAGTTGTTGGAAGGACTGGAAGTGGAAAAAGTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTTCAAGAGGTGACATTCTCATAGATGGGATTAATATATGCTCAATCGGGTTGAAGGATTTGAGAATGAAGCTAAGCATCATTCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACAAACCTGGACCCTCTAGGCCTGTACTCGGATGATGAAATATGGAAGGCTTTGGAGAAATGTCACCTGAAGGAAACAATCAGCAGATTACCAAGTCTCTTGGACTCTTCTGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAGCGCCAACTATTTTGTCTGGGAAGGGTACTACTTAAGAGGAACAGAATTCTAGTTCTGGATGAAGCTACTGCCTCCATTGACTCTGCCACAGATTCCATTCTACAAAAAGTAATTCGACAAGAATTTGCAGAATGCACGGTTATAACCGTTGCTCACCGAATTCCAACTGTAATAGACAGTGACATGGTCATGGTCCTATCTTACGGGAAACTAGTGGAATACGACGAGCCTTCAAAGCTAATGGACACCAACTCTTCATTCTCTAAGCTAGTAGCTGAATATTGGTCTAGCTGCACGAAGAGTTCCGTCCCAATCATTAACATACAGCAACAATGA 4446 0.3938 MLQKMVYFDSLRIHVGKGDFSLICLKDFDFTSLCSLRSAIDTVNILFVCAYYTSLFIGLIRKTSANRSHTRSWIFKLVSICCALISITFLVTGLWNLIEKTDNSNELSWLACNIKGIIWISLTISLLVQRGKWTKILNSVWWASSSVLISVLNIDILFKGHDAFETFDIIIWLVHFLLLLCAFKNLGYLGTHSVQECLSEPLLAQKIETKQTGLAHATFLSKLIFSWVNSLLSLGYSKPLALEDIPSLVSEDEASTAYQNFVHAWESLVKERTNNSTKSLVLWSVVKTYLKENTLIAFYALLRTISVVVSPLILYAFVNYSKRTEPNLKQGFSIVGFLILAKLVESLSQRHWFFNSRRSGMKIRSALMVAIYQKQLKLSSSARTRHSAGEIVNYIAVDAYKMGEFPWWFHITWTSVLQLILSIAILFGVVGIGALPGLVPLLICGLLNVPFARILQNCQSQFMTAQDERLRSTSEILNSMKIIKLQSWEEKFKNLVESLRDKEFVWLSKAQILKASSSFLFWLSPTVISAVVFIGCAVSKSAPLNAETIFTVLATLKNMGDPVKMIPEALSIMIQVKVSFDRLNKFLLDEELKNDDKSEKNLKQCSANAVVILAGNFTWDHESVSPALTDVNLEIKWGQKIAVCGPVGAGKSSLLYAILGEIPKIQGTVNVGGTLAYVSQSSWIQSGTVRDNILFGKPMNKKRYENAIKVCALDEDINDFSHGDLTEIGQRGINLSGGQKQRIQLARAVYKDADIYLLDDPFSAVDAHTAAILFKDCIMTALREKTIILVTHQVEFLPEVDTILVMEDGKVIQSGSYENLLTAGTAFEQLVNAHKDAVTEGNQDNKNKRGSENVVLANPQETHSFHLTKNQSKRKSSARGQFGVQLTKEEEKEIGDVGLKPFWDYISYSRGSFMLCFIVLAQFAFMALQTASTFWLAIAIENPKVTSATLIGVYSLISCAGVMFVYLRSYLNAHLGLKASIAYFSSFTTAIFNSPMMFFDSTPVGRILTRASSDLSILDFDMPHSIHFALSVAIEVLVIICIMVSVTWQVLIVAVPAMVASIFIQQYYQATARELMRINGTTKAPVMNFAAETSLGVVTVRAFNMVDRLIKYYLKLVDTDATLIFYSNVAMEWMVIRIEALQSLTVVTAALFLIMLPHGYVSPGLVGLSLFYAFNLTGAQIFCTRWFSNLSNHVISVERIKQFIHIPAEPPAIVEDNRPPSSWPSKGRIEVQGIEIRYRPDAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDGINICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCHLKETISRLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDSILQKVIRQEFAECTVITVAHRIPTVIDSDMVMVLSYGKLVEYDEPSKLMDTNSSFSKLVAEYWSSCTKSSVPIINIQQQ* 1482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2419 1481 CDD ABCC_MRP_domain1 610 810 - -
Tpr5g2419 1481 Gene3D - 1212 1463 IPR027417 -
Tpr5g2419 1481 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 71 1474 - -
Tpr5g2419 1481 CDD ABC_6TM_ABCC_D1 295 583 IPR044746 GO:0140359
Tpr5g2419 1481 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1231 1463 IPR003439 GO:0005524
Tpr5g2419 1481 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 612 833 IPR003439 GO:0005524
Tpr5g2419 1481 CDD ABC_6TM_ABCC_D2 911 1204 IPR044726 GO:0140359
Tpr5g2419 1481 SUPERFAMILY ABC transporter transmembrane region 900 1211 IPR036640 GO:0005524|GO:0016021
Tpr5g2419 1481 Pfam ABC transporter transmembrane region 914 1171 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2419 1481 Pfam ABC transporter transmembrane region 305 555 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2419 1481 Gene3D - 618 859 IPR027417 -
Tpr5g2419 1481 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 71 1474 - -
Tpr5g2419 1481 Gene3D ABC transporter type 1, transmembrane domain 266 592 IPR036640 GO:0005524|GO:0016021
Tpr5g2419 1481 Gene3D ABC transporter type 1, transmembrane domain 880 1210 IPR036640 GO:0005524|GO:0016021
Tpr5g2419 1481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 833 IPR027417 -
Tpr5g2419 1481 CDD ABCC_MRP_domain2 1227 1447 - -
Tpr5g2419 1481 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 917 1192 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2419 1481 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 295 575 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2419 1481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1219 1462 IPR027417 -
Tpr5g2419 1481 Pfam ABC transporter 628 762 IPR003439 GO:0005524
Tpr5g2419 1481 Pfam ABC transporter 1246 1394 IPR003439 GO:0005524
Tpr5g2419 1481 SMART AAA_5 1255 1440 IPR003593 -
Tpr5g2419 1481 SMART AAA_5 637 810 IPR003593 -
Tpr5g2419 1481 ProSitePatterns ABC transporters family signature. 735 749 IPR017871 GO:0005524
Tpr5g2419 1481 SUPERFAMILY ABC transporter transmembrane region 282 589 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2419 Tpr-Chr5 45834454 45845192 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2419 587 855 Calmodulin-binding Proteins AT2G36910 25.517 7.72e-21 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2419 - - gmx:100784827 2243.77