Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2418 ATGGATCAAGCTACTTTATCTGAGCCAAGAGAAAATCATAGTGTCCAAGAATGTTTATCTGAGCCACCATTAGCTCAAAAAATTGAAACTAAAGAAACAGGATTAGGTCATGCTACTTTTCATAGCAAGTTGATTTTCTCTTGGGTTAATTCTTTACTCATTTTAGGTTACTCAAAGCCACTAGATCTTGAAGATATACCTTCCCTTGCTTCTGACGATGAAGCAAACAAGACCTATCAAAAATTTGTTTATGCTTGGGAATCACTTGTTAGAGAGAGGAACAATACAAAGAGTTTGGTTCTTTGGTCTATAGCTAGAACTTACTTAAAAGAAAACATATTAATAGCATTTTATGCATTACTCAGAACTATTTCTGTTGCAGTTTCACCTCTAATTCTCTATGCTTTTGTTAACTACTCAAATAAAACTGAGGTAGATCGAAAAGAAGGTCTTTCTATAGTTGGTATTTTGATTCTCACCAAGTTGTTTGAGTCTTTTTCTCAAAGACATTGGTTTTTTAACTCAAGGAGGTCAGGAATGAAAATGAGATCAGCTCTGATGGTAGCAATTTATCGAAAGCAGCTCAAGCTTTCTAGCTCGGCGAGGACAAGACACTCTGCCGGTGAATTTGTGAATTACATTGCAGTTGATGCTTATAGAATGGGAGAGTTTCCATGGTGGTTTCATACAGCATGGACTTCTGTATTGCAAATTGTTCTTTCGACTGTTATCCTTTTTGGTGTCGTAGGTATTGGTGCTCTTCCTGGCTTAGTGCCTCTTCTTATATTTGGACTTCTCAATGTACCATTTGCAAGGATCCTAAAAAATTGTCAGTCACACATTATGATTGCACAGGACAAACGTCTTCAGTCAACTTCGGAGATTCTGAATAGTATGAAGATCATTAAGTTACAGTCATGGGAAGAAAAATTCAAGAGCTTAGTCGAGTCTTTACACAATGAAGAGTTTGTATGGTTGTCTAAGGCACAAATCCTAAAAGCTTTTGGATCATTTCTTTATTGGATGTCTCCTACAGTTATATCTGCTGTTGTTTTCGTTGGATGTGTTGTTTCAAAGAGTGCACCTTTAAATGCTGAAACCATTTTCACAATTCTTGTAACAGTGAGGAACATGGGAGAACCTGTTAGGATGATCCCTGAGGCTCTATCCATTATGATTCAAGTTAAGGTTTCGTTTGATCGTCTTAATAAGTTTTTGCTCGATGAAGAACTAAACAATGATGATAATGAAAGAAACTTACAGCAATGTTCAGTTAATGCTGTGGAAATTCAAGATGGAAACTTCATTTGGGATCATGAATCTGTCTCTCCAACTTTAATATACGTGAATTTAGAAATCAAACAGGGACAAAAAATAGCAGTTTGTGGACCTGTTGGAGCCGGAAAATCCTCACTTCTGTATGCAATACTTGGAGAGATTCTTAAAACTACAGGAACTGTTAATATAGGTGGCACACTAGCTTTTGTCTCCCAATCTTCTTGGATACAAAGTGGAACAGTTCAAGATAATATACTCTTTGGCAAGCCAATGGACAAAACAAGATATGAGAAAGCAATTAAAGCTTGTGACTTAGATAAGGATATCAATGATTTTAGTCATGGTGATCTTACAGAAATAGGTCAGAGAGGGATTAACCTGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCCGATATATATCTCCTTGATGATCCTTTCAGTGCAGTTGATGCACATACAGCTTCAATACTATTCAATGACTGTGTCATGACTTCTTTAAGAGAGAAAACGGTGGTTCTAGTTACTCATCAATTGGAGTTTCTTTCAGAAGTTGATAATATATTGGTAATGGAAGGTGGAAAAGTTATTCAATCGGGTAGTTATGAGAATATCCTTATAGCTGGAACAGCCTTTGAACTACTTGTGAGCGCTCGTAAAGATACAATTACTGACTTGAATCAAGATCATGAAAATAAAAGAGGTTCTGAAAATGAGGTTTTGTCTAATCCTCAAGACTCTCATGGTTCTGAAAATGAGGGAGAGATTTCTAGTATCGAGGGTCCAATTGGTTCACAGCTTACACAAGAAGAAGAAAAAGTGATTGGTAATGTTGGATGGAAATCATTCTGGAATTATATAGATTATTCCAAAGGGTCATTCATGTTGTTTTTTATCGTGTTTACACAATCTGTTTTTTTGGCATTGCAGACTTCATCATCCTATTGGCTTGCTTTAGCCATTAAAATTCCAAAAGTAACTAATGTCACCTTGATTGGAGTTTATGCATTAATTTCTTTTGCTAGTGCTGCTTTTATATATGCAAGAACTTATTTAACTGCACTTTTGGGATTAAAAGCTTCTACTGCTTTCTTCTCGAGCTTCACTACATCTATCTTCAATGCTCCGATGCTTTTCTTTGATTCAACTCCTGTAGGAAGGATTTTAACTAGAGCTTCATCAGATTTGAGTATTTTGGACTTCAATATACCTTATTCCATCACCTTTGTAGTATCTATAACACTTGAAATTGCGGTGGTTATTTGTATAATGGCTTCAGTCACATGGCAAGTTCTCATTATTGCTGTTCCTGCAATGGTTGCATCAATATTCATTCAGAATTATTATCAAGCCACTGCAAGGGAACTAGTACGGATCAATGGAACAACCAAAGCTCCAGTAATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACTGTAAGAGCATTCAACATGGTAGACAGATTTTTCAAAAACTACTTAAAACTAGTGGACACAGATGCTTCGCTGTTTTTTCACTCTAATGTGACAATGGAATGGGTAATTCTAAGGGTTGAAGCACTTCAAAATTTAACTGTCATCTCCGCAGCTTTGTTTCTTATTCTACTTCCTCAGAGATATGTATCCCCAGGCCTTGTGGGACTGTCTTTTTCTTATGCTTTTACCTTAACAGGAGCCCAAGTATTTTGGACTAGATGGTTTTCCAACTTATCAAACTATATTATCTCAGTTGAAAGAATCAATCAATTCATTCACATACCAGCTGAGCCTGCTGCCATTGTGGATAATAATCGACCTCCATCTTCATGGCCTTCCAAGGGCAAGATTGATCTTCAAGGCTTAGAGATTCGATATCGTCCTAATGCTCCATTAGTCCTTAAGGGAATCACTTGTACATTTCATGAAGGGAGTAGGGTGGGAGTTGTTGGTAGGACCGGAAGTGGAAAAAGTACACTTATAAGTGGTTTGTTTCGCTTAGTTGAGCCTTCAACAGGTGATATTCTCATAGATGGGATAAACATATGCTCAATCGGGTTGAAGGATTTGAGAACAAAGCTAAGCATCATTCCTCAAGAACCAACACTTTTCAAGGGCAGCATTAGGACAAACCCGGACCCTCTAGGCCTGTACTCGGATGATGAAATATGGAAGGTTGTAGAGAAATGTCAGCTTAAGGAAACAATCGATAAGCTACCAAGTCTCTTGGATTCTTCAGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGAGAAAGGCAATTAATTTGTCTTGGAAGAGTTCTACTTAAGAGAAACAGAATTCTAGTTTTGGATGAAGCTACTGCATCCATTGATTCTGCCACAGATGTCATTCTACAAAGAGTAATTAGACAAGAATTTGCAGAATGCACGGTTATAACCGTTGCTCACAGAATTCCAACTGTAATAGACAGTGACATGGTCATGGTCCTATCTTATGGGAAACTGGTGGAATATGATGAGCCTTCAAAGCTAATGAACACCAACTCTTCATTCTCTAAGCTGGTAGCCGAGTATTGGTCTAGCTGCAAGAAGAATTCCTTCACAAACATAAGCAAACAGCCACTATGA 3888 0.3753 MDQATLSEPRENHSVQECLSEPPLAQKIETKETGLGHATFHSKLIFSWVNSLLILGYSKPLDLEDIPSLASDDEANKTYQKFVYAWESLVRERNNTKSLVLWSIARTYLKENILIAFYALLRTISVAVSPLILYAFVNYSNKTEVDRKEGLSIVGILILTKLFESFSQRHWFFNSRRSGMKMRSALMVAIYRKQLKLSSSARTRHSAGEFVNYIAVDAYRMGEFPWWFHTAWTSVLQIVLSTVILFGVVGIGALPGLVPLLIFGLLNVPFARILKNCQSHIMIAQDKRLQSTSEILNSMKIIKLQSWEEKFKSLVESLHNEEFVWLSKAQILKAFGSFLYWMSPTVISAVVFVGCVVSKSAPLNAETIFTILVTVRNMGEPVRMIPEALSIMIQVKVSFDRLNKFLLDEELNNDDNERNLQQCSVNAVEIQDGNFIWDHESVSPTLIYVNLEIKQGQKIAVCGPVGAGKSSLLYAILGEILKTTGTVNIGGTLAFVSQSSWIQSGTVQDNILFGKPMDKTRYEKAIKACDLDKDINDFSHGDLTEIGQRGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTASILFNDCVMTSLREKTVVLVTHQLEFLSEVDNILVMEGGKVIQSGSYENILIAGTAFELLVSARKDTITDLNQDHENKRGSENEVLSNPQDSHGSENEGEISSIEGPIGSQLTQEEEKVIGNVGWKSFWNYIDYSKGSFMLFFIVFTQSVFLALQTSSSYWLALAIKIPKVTNVTLIGVYALISFASAAFIYARTYLTALLGLKASTAFFSSFTTSIFNAPMLFFDSTPVGRILTRASSDLSILDFNIPYSITFVVSITLEIAVVICIMASVTWQVLIIAVPAMVASIFIQNYYQATARELVRINGTTKAPVMNFAAETSLGVVTVRAFNMVDRFFKNYLKLVDTDASLFFHSNVTMEWVILRVEALQNLTVISAALFLILLPQRYVSPGLVGLSFSYAFTLTGAQVFWTRWFSNLSNYIISVERINQFIHIPAEPAAIVDNNRPPSSWPSKGKIDLQGLEIRYRPNAPLVLKGITCTFHEGSRVGVVGRTGSGKSTLISGLFRLVEPSTGDILIDGINICSIGLKDLRTKLSIIPQEPTLFKGSIRTNPDPLGLYSDDEIWKVVEKCQLKETIDKLPSLLDSSVSDEGGNWSLGERQLICLGRVLLKRNRILVLDEATASIDSATDVILQRVIRQEFAECTVITVAHRIPTVIDSDMVMVLSYGKLVEYDEPSKLMNTNSSFSKLVAEYWSSCKKNSFTNISKQPL* 1296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2418 1295 Gene3D - 1026 1277 IPR027417 -
Tpr5g2418 1295 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 35 1283 - -
Tpr5g2418 1295 Pfam ABC transporter 1060 1208 IPR003439 GO:0005524
Tpr5g2418 1295 Pfam ABC transporter 449 580 IPR003439 GO:0005524
Tpr5g2418 1295 CDD ABC_6TM_ABCC_D1 114 402 IPR044746 GO:0140359
Tpr5g2418 1295 Gene3D - 438 677 IPR027417 -
Tpr5g2418 1295 ProSitePatterns ABC transporters family signature. 553 567 IPR017871 GO:0005524
Tpr5g2418 1295 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 113 394 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2418 1295 CDD ABCC_MRP_domain1 428 628 - -
Tpr5g2418 1295 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 730 993 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2418 1295 CDD ABC_6TM_ABCC_D2 725 1018 IPR044726 GO:0140359
Tpr5g2418 1295 Pfam ABC transporter transmembrane region 114 373 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2418 1295 Pfam ABC transporter transmembrane region 729 992 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g2418 1295 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1045 1277 IPR003439 GO:0005524
Tpr5g2418 1295 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 35 1283 - -
Tpr5g2418 1295 MobiDBLite consensus disorder prediction 671 688 - -
Tpr5g2418 1295 SMART AAA_5 455 628 IPR003593 -
Tpr5g2418 1295 SMART AAA_5 1069 1254 IPR003593 -
Tpr5g2418 1295 Gene3D ABC transporter type 1, transmembrane domain 88 410 IPR036640 GO:0005524|GO:0016021
Tpr5g2418 1295 Gene3D ABC transporter type 1, transmembrane domain 696 1024 IPR036640 GO:0005524|GO:0016021
Tpr5g2418 1295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1033 1276 IPR027417 -
Tpr5g2418 1295 MobiDBLite consensus disorder prediction 662 688 - -
Tpr5g2418 1295 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 428 651 IPR003439 GO:0005524
Tpr5g2418 1295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 646 IPR027417 -
Tpr5g2418 1295 SUPERFAMILY ABC transporter transmembrane region 717 1029 IPR036640 GO:0005524|GO:0016021
Tpr5g2418 1295 SUPERFAMILY ABC transporter transmembrane region 101 408 IPR036640 GO:0005524|GO:0016021
Tpr5g2418 1295 CDD ABCC_MRP_domain2 1041 1261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2418 Tpr-Chr5 45819234 45826451 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2418 428 642 Calmodulin-binding Proteins AT2G36910 27.948 6.66e-20 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2418 - - gmx:100784827 1953.72