Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2364 ATGAACAACATTAACATCAACAAAAACAACAACAACACAACTCAAGCTTGTGCTGCATGTAAATACCAACGTAGGAAATGTGCTCCTGATTGCATATTAGCACCTTATTTTCCTCATGATCGTCAAAGACAATTCCTTAATGCACACAAATTATTTGGTGTTAGTAATATTAACAAAATCATTAAATATCTTGATCCTCCTCTAAAAGATCAAGCCATGAGAACAATCATTTATCAATCTGATATGCGGGCCAATGATCCTGTCGGCGGTTGTTATAAATATATTCAAGATCTTCAAGCTCAAATTGAATATTGTAAAATAGAACTTGATCTTGTTCTTCAACAACTCGCGGTTTATCGAGCACAACCTCATCAACAACAACCACAAGTGGTTAATTATGGTGATCAAGTTATTATGAATTCAGATTCATTGTTAGGTTTTTATAATCCATCTGGATCTGTTGTTCCGGCTACCGCGCCGGCTCATTATCATTACAATGTTCAACAACAAGTGGTTACACCATTACAAGAACATGAACAAGAACAATACCTTATGATGCATGAAAGTAATAGTAGTAGTATTAATAGTACTACTCCTTTGCAACAACATATTAATAATTGGGGGGCTATGCAAAATTCTATTTCTTTATCATCTTTGTCATTGCATGGACAAAGTAGTAATGCTAGTGATGAATATGATCATAAGCCTACTCTTGATATACCTTGTGACGAAAGAAATGAATTAGGATTCGACTCCGGAGAAATACTTCACCACAGTGATGAATCAGTTTTGTTTAAGATAGATGATGGATTAATTAAAGCAGAGGGTGGCTACATTCAAGAAACACAAGCTCAAGAACAAGATCATGATCTAAAAGGAGCAGCAACATTGTTTACTCTAACAAATTGTACTAGTTGA 918 0.3464 MNNININKNNNNTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNINKIIKYLDPPLKDQAMRTIIYQSDMRANDPVGGCYKYIQDLQAQIEYCKIELDLVLQQLAVYRAQPHQQQPQVVNYGDQVIMNSDSLLGFYNPSGSVVPATAPAHYHYNVQQQVVTPLQEHEQEQYLMMHESNSSSINSTTPLQQHINNWGAMQNSISLSSLSLHGQSSNASDEYDHKPTLDIPCDERNELGFDSGEILHHSDESVLFKIDDGLIKAEGGYIQETQAQEQDHDLKGAATLFTLTNCTS* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2364 305 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Tpr5g2364 305 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 10 241 - -
Tpr5g2364 305 Pfam Lateral organ boundaries (LOB) domain 16 111 IPR004883 -
Tpr5g2364 305 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2364 Tpr-Chr5 45171555 45172620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2364 15 130 AS2 family AT3G13850 72.269 8.05e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr5g2364 LOB 4.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2364 - - pvu:PHAVU_010G138500g 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2364 5 45171555 45172620 Tpr5g2364 5 45171555 45172620 ECH
Tpr7g4836 7 56338771 56340638 Tpr5g2364 5 45171555 45172620 PCT