Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2360 ATGGTAAAAAGTTTTATGTTCCAACAACAACAGCAACAGCAACAACCTCAGCAACAACAAGTGATAGAAGAAAACATGTCAAATTTAACTTCTGCATCTGGTGAAGCTAGTGAAATTGGTACTAGTTACTCTCAAGAACAATACTTAGCTCCTCCAACACAAACAGTCAAGAAAAAAAGAAACCTTCCTGGTAACCCAGACCCAGAAGCTGAGGTAATAGCTTTATCACCAAAGAGTCTACTAGCAAAAAACAGATTCCTTTGTGAGATCTGTAACAAAGGTTTTCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAACTTACCATGGAAGTTGAAGCAAAGAACAAGTAAAGAGATAAGAAAGAAAGTTTATGTATGTCCAGAAACAACTTGTGTGCATCATGATCCATCAAGGGCATTAGGAGATTTAACTGGAATCAAAAAGCACTTTTGCAGAAAACATGGTGAGAAAAAGTGGAAATGTGAAAAATGTTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCAAAAACATGTGGCACTAGAGAGTATAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTTATAACACATAGAGCATTTTGTGATGCATTAGCAGAAGAGAGTGCAAGAGCTATGACAAACATGACAATTCCAATTTTACCCTCACAACAACAACCTTCATCATCACCATCTTCTAATCACATGATTAATCTACAAACCCAATTCAATAATCCTCAATCACAAGAGCTTAATCATGTTTTTCAATTAAAAAAAGAACAACAACAACAAAATCAAAATCAAAATCAAAGTTTCAACCTTTCAGAAATTCCACCTTGGCTTGGACCACCTAATAATGTTGATACTATATCATCAACATCATCAATTTTCTCTCAAAATAATCACTTTTCATCACATAATCAAGAAAACCCTAACCCTAATCTTGTTCATGTTTCTGGGCCCACACTTCCTCCTTACCAAACAGTACCTTCCCCACACATGTCAGCTACTGCATTATTGCAGAAAGCAGCTCAAATGGGTGCAACAATGAACAGAAATGGTTCTGCTTCTTCACCAGCTATGAATATTATGACCCACCAACTTGATTCTGATTCTCTCAACAATGTCTCTGGTCATTTTGGTTTGAATTTGTTGCCATCATCATCATCACATGAACATCAACAAAACAGAACAAGCAATACTACTACTACTACTACTACAACAACACCAACAACATGTTTTAATATTCATGATGTTATGTTTTCGTCTTCGTCATCTCCTTCTGGATTTGAACAAGCACATTTTGATGAAATGTTTAGTGGTATTATGAATTCAAAGAAAGATGGAAAAACTGTCGCGGATGACGGTGGTGGTGGAAATGAAGGATTGACTAGAGATTTCTTGGGACTTAGGCCATTGTCTCATAGTGATATTCTAAGTATTGCAGGGATTGGAAACTGCATGAATGATGAATCTCAAAAGCCATCATGGCAAGGTTAG 1524 0.3642 MVKSFMFQQQQQQQQPQQQQVIEENMSNLTSASGEASEIGTSYSQEQYLAPPTQTVKKKRNLPGNPDPEAEVIALSPKSLLAKNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPETTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAMTNMTIPILPSQQQPSSSPSSNHMINLQTQFNNPQSQELNHVFQLKKEQQQQNQNQNQSFNLSEIPPWLGPPNNVDTISSTSSIFSQNNHFSSHNQENPNPNLVHVSGPTLPPYQTVPSPHMSATALLQKAAQMGATMNRNGSASSPAMNIMTHQLDSDSLNNVSGHFGLNLLPSSSSHEHQQNRTSNTTTTTTTTTPTTCFNIHDVMFSSSSSPSGFEQAHFDEMFSGIMNSKKDGKTVADDGGGGNEGLTRDFLGLRPLSHSDILSIAGIGNCMNDESQKPSWQG* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2360 507 Gene3D Classic Zinc Finger 66 136 - -
Tpr5g2360 507 MobiDBLite consensus disorder prediction 394 415 - -
Tpr5g2360 507 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Tpr5g2360 507 SMART c2h2final6 162 182 IPR013087 -
Tpr5g2360 507 SMART c2h2final6 127 157 IPR013087 -
Tpr5g2360 507 SMART c2h2final6 86 108 IPR013087 -
Tpr5g2360 507 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 31 494 - -
Tpr5g2360 507 SUPERFAMILY beta-beta-alpha zinc fingers 85 182 IPR036236 -
Tpr5g2360 507 MobiDBLite consensus disorder prediction 1 65 - -
Tpr5g2360 507 MobiDBLite consensus disorder prediction 1 60 - -
Tpr5g2360 507 Gene3D Classic Zinc Finger 155 221 - -
Tpr5g2360 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Tpr5g2360 507 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 31 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2360 Tpr-Chr5 45140456 45143704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2360 26 507 IDZ Gene Family AT3G13810 45.985 3.50e-136 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr5g2360 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2360 K25870 - qsu:111995117 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4834 7 56318370 56321724 Tpr5g2360 5 45140456 45143704 PCT