Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2352 ATGGCACACACTTGTTGCCACAAAGAGAAGGTGAAAAGAGGACTATGGTCACCAGAAGAAGATGAAAAACTCATCAATTACATCACAACTCATGGACAAGGTTGTTGGAGCTCTGTTCCAAAACTGGCTGGTCTTCAAAGATGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAATTTCTCTAATGAAGAAGCTGCACTCATTATAGAACTCCACAGCATTCTAGGCAATAGGTGGGCTCAAATTGCCAAACACTTACCAGGTAGAACAGACAACGAAGTGAAAAACTTTTGGAATTCATCGGTAAAGAAGAGAATCCTTTCTCACAATATTATTCCATCTTTCAACACATTTTCTAATGTTCACATCCCCTTCAATCATTATCAATATCATCATCAAGATCACCTATACTTTCCATCCTCATCTCAAAATTTACAAAGTAATTTTCATATTCAAAATCCAGTTCCAGAAATAGCACAACCAATATTTAATCCTCCTTGTTATGAAGATACATGTTCAATGGATTGTGTACCTCTTCATCTCAATTCAAATCAAGAAAATCAAATTTCTAAAAGTGATACCACCTCACTAAATATTGTTGACAAATTAATCAACCCAACTACATTAATTCAACAATATGATCAATGTCATGATGATGACTTGTTTGAACTTGAATACATTGTGCCTAAAATGAGTGATCAAAGTTTTGAGGATTATTATGCTTGTAGCAACCCAATTGAATTAATGCAACAATATGATAAGTGTCATGATCATCATCACTTGGTTGAATTTGATCAACCAATTGTGCCTAAATTATTCAATGATCAAAGCCATGAGGATTATGCTTGTAGCTTCCAAGAATCATCTAATTTTGAAGCTCATGAAGCTACAATAAAAATTCAGGGCTACACATCAAGTAGTATTTATTCACAAGATCACACTTTGGAAGCTAATCAATTCGATTACAATTCCTGTTGA 1005 0.3423 MAHTCCHKEKVKRGLWSPEEDEKLINYITTHGQGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGNFSNEEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSVKKRILSHNIIPSFNTFSNVHIPFNHYQYHHQDHLYFPSSSQNLQSNFHIQNPVPEIAQPIFNPPCYEDTCSMDCVPLHLNSNQENQISKSDTTSLNIVDKLINPTTLIQQYDQCHDDDLFELEYIVPKMSDQSFEDYYACSNPIELMQQYDKCHDHHHLVEFDQPIVPKLFNDQSHEDYACSFQESSNFEAHEATIKIQGYTSSSIYSQDHTLEANQFDYNSC* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2352 334 CDD SANT 68 108 IPR001005 -
Tpr5g2352 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Tpr5g2352 334 Gene3D - 68 115 - -
Tpr5g2352 334 Gene3D - 10 66 - -
Tpr5g2352 334 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Tpr5g2352 334 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Tpr5g2352 334 CDD SANT 16 60 IPR001005 -
Tpr5g2352 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Tpr5g2352 334 PANTHER MYB DOMAIN PROTEIN 55 1 314 - -
Tpr5g2352 334 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Tpr5g2352 334 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Tpr5g2352 334 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Tpr5g2352 334 PANTHER TRANSCRIPTION FACTOR MYB26 1 314 - -
Tpr5g2352 334 SMART sant 65 113 IPR001005 -
Tpr5g2352 334 SMART sant 12 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2352 Tpr-Chr5 45043402 45045175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2352 3 324 MYB Transcription Factor Family AT3G13890 44.315 1.70e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr5g2352 Myb_DNA-binding 7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2352 K09422 - gmx:100785147 330.872