Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2351 ATGGTACATCACTCTTGTTGCAACAAACAGAAGGTGAAAAGAGGATTATGGTCACCTGAAGAAGATGAAAAACTCATCAAATACATCACAACTTATGGACATGGTTGTTGGAGCTCAGTTCCAAAACTTGCTGGTCTTCAAAGATGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAGTTTTTCTCATCAAGAAGCTGCACTCATTATAGAACTCCATAGCATTCTAGGCAATAGATGGGCTCAGATTGCGAAGCACTTACCAGGAAGAACAGATAACGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAAAAACTCTTTTCTCATGATTTTATTCCATCCTTCACCACATTTTCTAATATTCACACCCCCTACAATATTGGTTCTATGGATAGTTTCTTCCCTAATCCTAATGTGATACTAAATATCAATCATCACCATCAAGATCAGCTATATCTTCCAACCTCATCTCCAAATCAACAAGGCTTTCACCAAATTGATACAAAGGTAGACATCAATAATCAATATAAATCCAATTTCATTCACATTCAAAATCCAATTCAAGAAATAGTACAACCAATATCAAACCCTACACCTTATGAAGATACATGGTCATTGGATTGTGTAGCTCTTCATCTCAAGTCAAATCAAGAAAATCAAATTTCCAAAAGTGATACAACCCCACTTAATAGTGTTGACAAATTAATCAACCCAATTGAATTAATGCAACAATATGATCAATATCATGATGATCCTCACTTAGTTGAACTTGATCAACCAATTATGCCTAAATTAGTCAATGATCAAACCCTTGAGGATTATGTTTGTAGCATCCTAGATTCATCTAATTCCCAAGAACATGAGACTTCAACAAAAATTGAGTGCTACACATCTAGTATTGTTTATCCACAAGATCAAATTTTGGAAGCTAATCAATTGGATTACAATATTGATGCACTCATGTCATCATTGCCATCCACAAGTAGCCAAATTGTCACAAACCATATAATGACTTTAGGATGGGAGCCTTAA 1062 0.3475 MVHHSCCNKQKVKRGLWSPEEDEKLIKYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSHQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLFSHDFIPSFTTFSNIHTPYNIGSMDSFFPNPNVILNINHHHQDQLYLPTSSPNQQGFHQIDTKVDINNQYKSNFIHIQNPIQEIVQPISNPTPYEDTWSLDCVALHLKSNQENQISKSDTTPLNSVDKLINPIELMQQYDQYHDDPHLVELDQPIMPKLVNDQTLEDYVCSILDSSNSQEHETSTKIECYTSSIVYPQDQILEANQLDYNIDALMSSLPSTSSQIVTNHIMTLGWEP* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2351 353 Gene3D - 69 116 - -
Tpr5g2351 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Tpr5g2351 353 CDD SANT 17 61 IPR001005 -
Tpr5g2351 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Tpr5g2351 353 SMART sant 66 114 IPR001005 -
Tpr5g2351 353 SMART sant 13 63 IPR001005 -
Tpr5g2351 353 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Tpr5g2351 353 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr5g2351 353 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr5g2351 353 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tpr5g2351 353 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr5g2351 353 PANTHER MYB DOMAIN PROTEIN 55 1 340 - -
Tpr5g2351 353 CDD SANT 69 109 IPR001005 -
Tpr5g2351 353 Gene3D - 11 67 - -
Tpr5g2351 353 PANTHER TRANSCRIPTION FACTOR MYB26 1 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2351 Tpr-Chr5 45027216 45029591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2351 1 118 MYB Transcription Factor Family AT3G13890 94.068 6.19e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr5g2351 Myb_DNA-binding 6.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2351 K09422 - gmx:100785147 462.611