Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2342 ATGGAACCTCGAATTGGGAATAAGTTCCGTCTTGGTCGGAAAATTGGTAGCGGATCTTTTGGAGAGATCTATCTCGGTACCAATATTCAAACAAATGAAGAAGTTGCGGTTAAGCTTGAAAATGTCAAAACCAAGCACCCGCAATTGTTGTATGAAGCAAAGCTGTATAAACTACTGCAAGGAGGAACTGGGATTCCGAATGTGAAATGGTCTGGTGTCGAAGGAGAGTACAATGTCCTTGTGATGGATTTACTTGGCCCTAGTCTTGAGGATTTATTCAATTTCTGTAACAGGAAGTTGTCCCTCAAAACTGTTCTCATGCTTGCTGATCAAATGATAAACCGAGTCGAATTTTTTCATTCCAAGTCATTTTTACATCGGGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGAAGGCGTGCAAATCAAGTGTACGTCATTGACTTTGGTCTTGCTAAGAAATTCAGAGACAGCGCAAATCGGCATATTCCATACAGAGAGAATAAGAATCTGACGGGAACTGCTAGGTATGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGTCGTAGGGATGATTTAGAGTCACTTGGATATGTTCTTATGTATTTCTTAAGAGGAAGTCTGCCTTGGCAGGGATTGAAAGCCGGTACTAAGAAGCAGAAGTATGAGAGAATCAGCGAGAAGAAAGTTTCTACTTCTATTGAATCTCTCTGCCGTGGCTATCCCTCAGAATTTGCATCATACTTCCATTATTGTCGGTCACTGAGGTTTGATGATAAACCTGATTATGCTTATCTGAAAAGACTTTTGCGCGACCTTTTCATCCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATCGCCCCTCCTCCTTCCCGTGGTATTGGTCTTGCTGCTGGACCAAGTTCTGGTCTGCCACTAACTTCTGCAAATGCTGATGGACAGTCAGGTGGCAAAGATGTTAGGAATACTGGGTGGTCTTCATCTGATCCTACTCGTAGGAGAACTTCTGGACCTATTGCCAATGATGGAATCTTATCTAGAGAAAAAGCGCCGCTTACAAATGACTTAACTGGATCTAAAGATGCTATGTTGTCAAGTTCGAATTTCTTTCGGTCAAGTGGATCTGCAAGGCGAGGTGCTATCTTAAGCGGTCGTGATGCAGTTGCTGGCAGTGAGACTGAGCCCTCCTCTCGTCCTCTAACGATGGATTTGAGTCAAGGTGCACTCCGTAACAGCTCTGGTGCTCAGAGAAGTTCACATATCATGTCATCTGAGCACAACCGAGTATCATCTGGAAGAAACACATCAAACGTAAAGAATTTGGCAGCTGCTATTGAAAGTCTGCATATTAACGATGAGAGGGCACAGTATTAG 1413 0.4268 MEPRIGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAVKLENVKTKHPQLLYEAKLYKLLQGGTGIPNVKWSGVEGEYNVLVMDLLGPSLEDLFNFCNRKLSLKTVLMLADQMINRVEFFHSKSFLHRDIKPDNFLMGLGRRANQVYVIDFGLAKKFRDSANRHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYERISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLLRDLFIREGFQFDYVFDWTILKYQQSQIAPPPSRGIGLAAGPSSGLPLTSANADGQSGGKDVRNTGWSSSDPTRRRTSGPIANDGILSREKAPLTNDLTGSKDAMLSSSNFFRSSGSARRGAILSGRDAVAGSETEPSSRPLTMDLSQGALRNSSGAQRSSHIMSSEHNRVSSGRNTSNVKNLAAAIESLHINDERAQY* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2342 470 CDD STKc_CK1_delta_epsilon 8 281 - -
Tpr5g2342 470 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g2342 470 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 456 IPR030509 GO:0004672|GO:0005524
Tpr5g2342 470 MobiDBLite consensus disorder prediction 318 362 - -
Tpr5g2342 470 MobiDBLite consensus disorder prediction 422 448 - -
Tpr5g2342 470 SMART serkin_6 9 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g2342 470 Gene3D Transferase(Phosphotransferase) domain 1 1 305 - -
Tpr5g2342 470 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Tpr5g2342 470 MobiDBLite consensus disorder prediction 318 348 - -
Tpr5g2342 470 SUPERFAMILY Protein kinase-like (PK-like) 5 289 IPR011009 -
Tpr5g2342 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Tpr5g2342 470 Pfam Protein kinase domain 10 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g2342 470 PANTHER CASEIN KINASE-RELATED 1 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2342 Tpr-Chr5 44915562 44920791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2342 7 222 EF-hand Containing Proteins AT2G17890 26.339 1.89e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Tpr5g2342 Pkinase 1.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2342 K02218 - gmx:100778165 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4816 7 56156086 56161394 Tpr5g2342 5 44915562 44920791 PCT