Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2340 ATGGGGAATCAAAAGCTTAAATGGACATCGGAAGAAGAAGACGCACTTGTTGCAGGAATCAAAAAACACGGTGCTGGAAAATGGAGGGCCATTCTTCTTGATCCTCAGTTTGCTCCTTTACTCACTTCTCGTTCCAACATCGACCTCAAGGATAAATGGCGAAATATGAATGTTTATGTGACTTCTGAAGGTGTTAGGACTCCCAAGCCCAAAGTTGCTGCTACTACTTCTTCTGATATTGTTATCAATGATTCTTGTCAAAATGAACAAGATGTTAATACCCCTCTAAGGTACAATGCCATGGTTTTTGAAGCTCTATCTACATTAAAAGATACTAATGGGTCCGATCTAAACGCCATTGCTAGTTTCATTGAGCAAAAGCATCAGGTTCCTCAAAATTTCAGAAGGACACTGAGTTCGAGGATAAGAACCCTTGTGAATCAAGAGAAGCTTGAAAAGGTACAAAATTGTTACAAGATAAAAAAAGAAACCTCATTGGTGACAAAATCACCTTCATCAAAACAAAAGGCGGTAAAGCCACAACAGCAATCATCAGTCGCTGATGATATGCTGAAGAAAGCAGCTGATACTGCAGCATACATAGTTGCTGAGGCTGAAAACAAATCATATCTGGCAGTTGAGGCATGCAAGGAGACTGAAAGATTCTCACGTTTGGCCGAAGAAAACGATGCAATGTTATTGCTAGCCGAAGAACTTTATAAACAATGTTTGCGCGGTGAAACTCTCAAATGGGCTTAA 759 0.4005 MGNQKLKWTSEEEDALVAGIKKHGAGKWRAILLDPQFAPLLTSRSNIDLKDKWRNMNVYVTSEGVRTPKPKVAATTSSDIVINDSCQNEQDVNTPLRYNAMVFEALSTLKDTNGSDLNAIASFIEQKHQVPQNFRRTLSSRIRTLVNQEKLEKVQNCYKIKKETSLVTKSPSSKQKAVKPQQQSSVADDMLKKAADTAAYIVAEAENKSYLAVEACKETERFSRLAEENDAMLLLAEELYKQCLRGETLKWA* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2340 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Tpr5g2340 252 Pfam linker histone H1 and H5 family 97 155 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr5g2340 252 PANTHER SINGLE MYB HISTONE 4 1 250 IPR044597 GO:0003691
Tpr5g2340 252 Gene3D - 2 58 - -
Tpr5g2340 252 SMART sant 4 59 IPR001005 -
Tpr5g2340 252 Pfam Myb-like DNA-binding domain 6 56 IPR001005 -
Tpr5g2340 252 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 94 162 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr5g2340 252 Gene3D - 92 183 IPR036388 -
Tpr5g2340 252 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 250 - -
Tpr5g2340 252 CDD SANT_TRF 7 57 - -
Tpr5g2340 252 SMART h15plus2 91 157 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr5g2340 252 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Tpr5g2340 252 SUPERFAMILY Homeodomain-like 3 59 IPR009057 -
Tpr5g2340 252 SUPERFAMILY "Winged helix" DNA-binding domain 96 170 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2340 Tpr-Chr5 44893824 44898675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2340 1 249 Single Myb Histone (SMH) Gene Family AT1G72740 44.086 3.42e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr5g2340 Linker_histone 6.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2340 K09422 - gmx:778177 291.967