Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2334 ATGTCAAGAGAGTTTGATTTCATCAAGGATCTCACCAAAGATAGGGAGATTTGGAAAATAGCTGTAAGAGTGGTTGACACTTGGACTGTTATAGGCACCAATGGTTTTCCACATGTTGAAATGGTTATTGCTGATTCAAAGGGTGATCGTGTTCAAGCTATAACTCGCCATAAGGAATTTGAACATTGGAAGGAATTTGTTGTCTACAATAATGTCTATGTTTTGCATAACTGTCATGTTTATGATAATGATGCAGGTTTTAAAACCTGTGATAGTCCATACAAAGTTGTGTTTGGATCCGGTACCAAGTTCATGAAAGATGACTCTATCACTAACATTCCTCCTCATCATTTTCGCTTCAAAAGTTTTAAGGAAGTTCAGGATGGAAAGTTTAAAATCAATATTTTGTATGAGATCATTGGCGTTCTTCATGAAGTTGTCAAAACTCAGACCGCAGCTTCTGGAAAAAAACCTTGCACAAATTTAATCTTGGCTAATGAAAGTGGAGACATGGTTGATGTTACTTTGTGGGAAGCTTTTTCTACTCAATTACAAAACTTCATTTCTGGTCGCAAAGAAAAGGGTCCAATCTTTTTAATCCTAACACATGCTCAGTGTAAACTAGGAGATAATGGGAGGCCAACCTTTTGTAACAATTGGTCAGGATCACAGCTTTTAATCAATCATAACCACCCAGATGTTGCCAACTTTAAGTCTTTATTTAAAGACATTGAAAACTCTCAAGCTGCTACTCAAGACTTTACTCAGGTTTCGTCTTCATCTCAATTAGGCAAAGATGACCACTTCTCAAATATGTCTCAGGTCAAAACTATTGCTCAAATGAAACTCTCTCAAAAGGACTCATATTGCATTACTGTTGGAACAACCAAAAAATTCAATCCTAATCAATTTGGTTGGTACTATGAGAGTTGTTCCAAATGCACAAAGTCCTCAAGGTCTATGGGTGAGAATTATACATGCTCATGTGGTGAAAATGTCAAACTTCCAATTGCTAGGTACAAAGTTGTTATTCAAGTTGAATCCGAAGGACATAAGGCTGATTTTGTTTTTTGGGATAGTGAATGTCATGGTATTATTGGTACAACTGCTGAGGAACTAAGGGAGAAAATGAAGAAGGTTGGTGAGGACGATCCCAAAATCTATCCTATTGACCTTGACAAGCTACTCAACTTAGAGTTTGCATATAAAGTCAAGTACCAAACTTATTATCGTCAAGCTTCCATTAATCAAATGACCAATGATCCAACACTTATTGCTAACATCAAGCTTCACATGAATTTAAAACATCCTTCACAATCTGTTGAAATTGAACTCAAAGATGGAACTAATTCTCAAAAGGAGAACACTGAATGCTCTGATTCTTTGGCATTTGTTTCGCAATCTCTTTCGGCTTGCGGAGACAATGAATTTGACATTACTTCAAACTCTACACCTGCTAAGCGTCTTTCTGCAGCAATTCAAGTTGACGACATTGCATCTCCGCCTTTGACAACAACGAAGCGTTCATCCACAAAGAACGCCAAGCATATCAAACTTGAATGA 1563 0.3711 MSREFDFIKDLTKDREIWKIAVRVVDTWTVIGTNGFPHVEMVIADSKGDRVQAITRHKEFEHWKEFVVYNNVYVLHNCHVYDNDAGFKTCDSPYKVVFGSGTKFMKDDSITNIPPHHFRFKSFKEVQDGKFKINILYEIIGVLHEVVKTQTAASGKKPCTNLILANESGDMVDVTLWEAFSTQLQNFISGRKEKGPIFLILTHAQCKLGDNGRPTFCNNWSGSQLLINHNHPDVANFKSLFKDIENSQAATQDFTQVSSSSQLGKDDHFSNMSQVKTIAQMKLSQKDSYCITVGTTKKFNPNQFGWYYESCSKCTKSSRSMGENYTCSCGENVKLPIARYKVVIQVESEGHKADFVFWDSECHGIIGTTAEELREKMKKVGEDDPKIYPIDLDKLLNLEFAYKVKYQTYYRQASINQMTNDPTLIANIKLHMNLKHPSQSVEIELKDGTNSQKENTECSDSLAFVSQSLSACGDNEFDITSNSTPAKRLSAAIQVDDIASPPLTTTKRSSTKNAKHIKLE* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2334 520 Gene3D - 256 431 IPR012340 -
Tpr5g2334 520 Gene3D - 3 106 IPR012340 -
Tpr5g2334 520 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 45 377 - -
Tpr5g2334 520 PANTHER REPLICATION FACTOR A 1, RFA1 45 377 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr5g2334 520 SUPERFAMILY Nucleic acid-binding proteins 118 242 IPR012340 -
Tpr5g2334 520 MobiDBLite consensus disorder prediction 500 520 - -
Tpr5g2334 520 SUPERFAMILY Nucleic acid-binding proteins 275 412 IPR012340 -
Tpr5g2334 520 CDD RPA1_DBD_A_like 19 104 - -
Tpr5g2334 520 Gene3D - 111 253 IPR012340 -
Tpr5g2334 520 SUPERFAMILY Nucleic acid-binding proteins 4 114 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2334 Tpr-Chr5 44819039 44822308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2334 1 382 Core DNA Replication Machinery Family AT5G08020 21.945 1.99e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2334 - - mtr:MTR_6g464080 528.865